RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DPH6Q7L8W6 267 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 UBE2Q1Q7Z7E8 422 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 APPL2Q8NEU8 664 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 OR6B3Q8NGW1 331 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 DDX27Q96GQ7 796 aaKnown RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 PAAF1Q9BRP4 392 aa10.7□□□□□ -0.7
HMGB3-201ENST00000325307 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 V9GYY5 206 aaPredicted RBP10.7□□□□□ -0.7
HMGB3-201ENST00000325307 TBKBP1A7MCY6 615 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 SSTR3P32745 418 aaPredicted RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 BMS1Q14692 1282 aaKnown RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 NAB2Q15742 525 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 FAM117BQ6P1L5 589 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 DSTYKQ6XUX3 929 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 TBC1D13Q9NVG8 400 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 MMEP08473 750 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 TERF2Q15554 542 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ASTE1Q2TB18 679 aaPredicted RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ALKBH5Q6P6C2 394 aaKnown RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF280BQ86YH2 543 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 NPAS4Q8IUM7 802 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 FAXDC2Q96IV6 333 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 SNX25Q9H3E2 840 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 PCDHA13Q9Y5I0 950 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 TANC1Q9C0D5 1861 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 SPDYE4A6NLX3 237 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ZBBXA8MT70 800 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 DDX3XO00571 662 aaKnown RBP eCLIP10.69□□□□□ -0.75e-15■■□□□ 14.2
HMGB3-201ENST00000325307 CYB561D2O14569 222 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF263O14978 683 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 ANXA13P27216 316 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 OR1G1P47890 313 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 HEXIM2Q96MH2 286 aaKnown RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 MRPL45Q9BRJ2 306 aaKnown RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 HMGXB4Q9UGU5 601 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 NOCTQ9UK39 431 aaKnown RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 TFR2Q9UP52 801 aa10.69□□□□□ -0.7
HMGB3-201ENST00000325307 PRG3Q9Y2Y8 225 aaPredicted RBP10.69□□□□□ -0.7
HMGB3-201ENST00000325307 SCN1AP35498 2009 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 ABHD14A-ACY1A0A1B0GW23 586 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 SYN1P17600 705 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 IGFBP6P24592 240 aaPredicted RBP10.68□□□□□ -0.7
HMGB3-201ENST00000325307 NDST1P52848 882 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 CDR2Q01850 454 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 UPP1Q16831 310 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 OTOP2Q7RTS6 562 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 TTC39CQ8N584 583 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 UBR7Q8N806 425 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 LNX1Q8TBB1 728 aaPredicted RBP10.68□□□□□ -0.7
HMGB3-201ENST00000325307 SENP8Q96LD8 212 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 UROC1Q96N76 676 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 NAGPAQ9UK23 515 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 BARX2Q9UMQ3 279 aaPredicted RBP10.68□□□□□ -0.7
HMGB3-201ENST00000325307 I3L4J1 428 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 CILPO75339 1184 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 DDHD2O94830 711 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 AMHP03971 560 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 ARHGAP25P42331 645 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 SOWAHAQ2M3V2 549 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 DNAAF5Q86Y56 855 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 ADGRF2Q8IZF7 708 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 C3orf58Q8NDZ4 430 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 BADQ92934 168 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 GDAP2Q9NXN4 497 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 CNTN6Q9UQ52 1028 aa10.68□□□□□ -0.7
HMGB3-201ENST00000325307 TTC36A6NLP5 189 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 A8MXQ7 604 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 PDGFRBP09619 1106 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 KIF5AQ12840 1032 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 PASD1Q8IV76 773 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TXLNBQ8N3L3 684 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TMEM176AQ96HP8 235 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 HTATIP2Q9BUP3 242 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 NT5C1AQ9BXI3 368 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 L1RE1Q9UN81 338 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TIMM13Q9Y5L4 95 aaPredicted RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 GOLGA6L9A6NEM1 432 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 CCDC85CA6NKD9 419 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 INPPL1O15357 1258 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 SLU7O95391 586 aaKnown RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TUBB4AP04350 444 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 PFKMP08237 780 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 GNL1P36915 607 aaPredicted RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 VAV2P52735 878 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 FMO1Q01740 532 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 PPIGQ13427 754 aaKnown RBP eCLIP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 PALB2Q86YC2 1186 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 DPF3Q92784 378 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 CASD1Q96PB1 797 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 TWNKQ96RR1 684 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 MRPL9Q9BYD2 267 aaKnown RBP10.67□□□□□ -0.7
HMGB3-201ENST00000325307 ELOVL4Q9GZR5 314 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 IL23AQ9NPF7 189 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 DNAJB4Q9UDY4 337 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 GUCA1BQ9UMX6 200 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 CHRNB2P17787 502 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 BRCC3P46736 316 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 ZNF132P52740 706 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 RAD23BP54727 409 aa10.67□□□□□ -0.7
HMGB3-201ENST00000325307 NAP1L1P55209 391 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms