RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RIC8BQ9NVN3 520 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 CCDC78A2IDD5 438 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 DNAL1Q4LDG9 190 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 KHDRBS2Q5VWX1 349 aaKnown RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 USP38Q8NB14 1042 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 ZIM3Q96PE6 472 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 MUC3BQ9H195 1237 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 STN1Q9H668 368 aaKnown RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 CCL15-CCL14A0A0B4J2E2 113 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 TAF6P49848 677 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 NPEPPSP55786 919 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 EN1Q05925 392 aaPredicted RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 CCL15Q16663 113 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 NAPEPLDQ6IQ20 393 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 OOSP2Q86WS3 158 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 ICA1LQ8NDH6 482 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 TMEM143Q96AN5 459 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 FAM32AQ9Y421 112 aaKnown RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 CARNS1A5YM72 827 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 PHF20L1A8MW92 1017 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 KCNA4P22459 653 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 GCLCP48506 637 aaPredicted RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 SERPINB10P48595 397 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 FAM107AO95990 144 aa20■□□□□ 0.79
UPF1-201ENST00000262803 ANXA11P50995 505 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 TMEM259Q4ZIN3 620 aa20■□□□□ 0.79
UPF1-201ENST00000262803 KLHDC7AQ5VTJ3 777 aa20■□□□□ 0.79
UPF1-201ENST00000262803 MOXD1Q6UVY6 613 aa20■□□□□ 0.79
UPF1-201ENST00000262803 DBR1Q9UK59 544 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 C16orf96A6NNT2 1141 aa20■□□□□ 0.79
UPF1-201ENST00000262803 HSPA1AP0DMV8 641 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 HSPA1BP0DMV9 641 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 TDRD10Q5VZ19 366 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 DDX42Q86XP3 938 aaKnown RBP eCLIP20■□□□□ 0.79
UPF1-201ENST00000262803 PTPRN2Q92932 1015 aa20■□□□□ 0.79
UPF1-201ENST00000262803 PRPF18Q99633 342 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 C17orf102A2RUQ5 167 aa20■□□□□ 0.79
UPF1-201ENST00000262803 ZNF263O14978 683 aa20■□□□□ 0.79
UPF1-201ENST00000262803 ATP9BO43861 1147 aa20■□□□□ 0.79
UPF1-201ENST00000262803 COMTP21964 271 aa20■□□□□ 0.79
UPF1-201ENST00000262803 AGBL2Q5U5Z8 902 aa20■□□□□ 0.79
UPF1-201ENST00000262803 PCYOX1LQ8NBM8 494 aa20■□□□□ 0.79
UPF1-201ENST00000262803 VPS37AQ8NEZ2 397 aa20■□□□□ 0.79
UPF1-201ENST00000262803 CERKQ8TCT0 537 aa20■□□□□ 0.79
UPF1-201ENST00000262803 SGSM3Q96HU1 749 aa20■□□□□ 0.79
UPF1-201ENST00000262803 GLT1D1Q96MS3 346 aa20■□□□□ 0.79
UPF1-201ENST00000262803 DACH2Q96NX9 599 aa20■□□□□ 0.79
UPF1-201ENST00000262803 XPO6Q96QU8 1125 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 L2HGDHQ9H9P8 463 aa20■□□□□ 0.79
UPF1-201ENST00000262803 NMRK1Q9NWW6 199 aa20■□□□□ 0.79
UPF1-201ENST00000262803 MPP6Q9NZW5 540 aa20■□□□□ 0.79
UPF1-201ENST00000262803 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20■□□□□ 0.79
UPF1-201ENST00000262803 ALG6Q9Y672 507 aa20■□□□□ 0.79
UPF1-201ENST00000262803 UBE2Q2LH0YL09 131 aa20■□□□□ 0.79
UPF1-201ENST00000262803 GPR182O15218 404 aa20■□□□□ 0.79
UPF1-201ENST00000262803 GPD1P21695 349 aa20■□□□□ 0.79
UPF1-201ENST00000262803 HIST2H2ACQ16777 129 aaPredicted RBP20■□□□□ 0.79
UPF1-201ENST00000262803 NBPF20Q3BBV1 942 aa20■□□□□ 0.79
UPF1-201ENST00000262803 HIST2H2AA3Q6FI13 130 aa20■□□□□ 0.79
UPF1-201ENST00000262803 PSMC3IPQ9P2W1 217 aaPredicted RBP20■□□□□ 0.79
UPF1-201ENST00000262803 SPATA31A1Q5TZJ5 1347 aa20■□□□□ 0.79
UPF1-201ENST00000262803 LSP1P33241 339 aa20■□□□□ 0.79
UPF1-201ENST00000262803 NLRP11P59045 1033 aaKnown RBP20■□□□□ 0.79
UPF1-201ENST00000262803 TTLL9Q3SXZ7 439 aa20■□□□□ 0.79
UPF1-201ENST00000262803 DAGLBQ8NCG7 672 aa20■□□□□ 0.79
UPF1-201ENST00000262803 ANXA9O76027 345 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 GFM2Q969S9 779 aaKnown RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 GOLPH3Q9H4A6 298 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 AARS2Q5JTZ9 985 aaKnown RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 IL31Q6EBC2 164 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 C16orf89Q6UX73 402 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 FAM9CQ8IZT9 166 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 HNRNPLLQ8WVV9 542 aaKnown RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 MYOZ2Q9NPC6 264 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 DSEQ9UL01 958 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 PLAGL2Q9UPG8 496 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 CELF4Q9BZC1 486 aaKnown RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 YIPF3Q9GZM5 350 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 INO80Q9ULG1 1556 aaPredicted RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 KRT87PA6NCN2 255 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 POTEAQ6S8J7 498 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 CCNJLQ8IV13 435 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 KAZALD1Q96I82 304 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 ROPN1BQ9BZX4 212 aaPredicted RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 ISCUQ9H1K1 167 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 ROPN1Q9HAT0 212 aaPredicted RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 GGA3Q9NZ52 723 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 NEU2Q9Y3R4 380 aa19.99■□□□□ 0.79
UPF1-201ENST00000262803 USP15Q9Y4E8 981 aaPredicted RBP19.99■□□□□ 0.79
UPF1-201ENST00000262803 ARIH2O95376 493 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 LRG1P02750 347 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 FDFT1P37268 417 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 IRAK1P51617 712 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 SESN2P58004 480 aaPredicted RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 AASDHQ4L235 1098 aaPredicted RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 ANGEL2Q5VTE6 544 aaKnown RBP19.98■□□□□ 0.79
UPF1-201ENST00000262803 LRRC8EQ6NSJ5 796 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 ZNF555Q8NEP9 628 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 BLOC1S6Q9UL45 172 aa19.98■□□□□ 0.79
UPF1-201ENST00000262803 NKRFO15226 690 aaKnown RBP eCLIP19.98■□□□□ 0.792e-6■□□□□ 10.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms