RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 BROXQ5VW32 411 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 LCORLQ8N3X6 602 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 AFG1LQ8WV93 481 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 FAM20AQ96MK3 541 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CROTQ9UKG9 612 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PRPSAP2O60256 369 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RALBP11234 206 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DNAJB2P25686 324 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TARSP26639 723 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SPRP35270 261 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PRCPP42785 496 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 NCALDP61601 193 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 BNIP1Q12981 228 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CEP78Q5JTW2 689 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 MROH9Q5TGP6 573 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 MEI1Q5TIA1 1274 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TTC23Q5W5X9 447 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TTC30AQ86WT1 665 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SFRP1Q8N474 314 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ALLCQ8N6M5 410 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 KYQ8NBH2 561 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 IP6K1Q92551 441 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF26Q96DR7 871 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ECSITQ9BQ95 431 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DHX33Q9H6R0 707 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CLK4Q9HAZ1 481 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 C20orf96Q9NUD7 363 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TRMT6Q9UJA5 497 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 WDR64B1ANS9 1081 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ADCY6O43306 1168 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ECM2O94769 699 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ITGA2BP08514 1039 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GRK3P35626 688 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CDK18Q07002 472 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 STILQ15468 1287 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 NCCRP1Q6ZVX7 275 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ANKRD13AQ8IZ07 590 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TDRD5Q8NAT2 981 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RIN2Q8WYP3 895 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TEKT3Q9BXF9 490 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DYRK4Q9NR20 520 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CACNA2D2Q9NY47 1150 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CYP2J2P51589 502 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 YARSP54577 528 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GFPT1Q06210 699 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ATP1A4Q13733 1029 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PI16Q6UXB8 463 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PNMA1Q8ND90 353 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 WDR36Q8NI36 951 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CYP4F11Q9HBI6 524 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF10LQ9HCE6 1279 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PAK5Q9P286 719 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CNOT8Q9UFF9 292 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ATP7AQ04656 1500 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 C6orf229H3BNL8 230 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TOM1O60784 492 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PDGFRBP09619 1106 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 FASP25445 335 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GPS1Q13098 491 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ODR4Q5SWX8 454 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 NIPAL1Q6NVV3 410 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 KRT28Q7Z3Y7 464 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHG4BQ96PX9 1271 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DNAAF2Q9NVR5 837 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ASNSD1Q9NWL6 643 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DNAJB5O75953 348 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TGDSO95455 350 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PCCAP05165 728 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TNNI1P19237 187 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CCNA2P20248 432 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 EIF2B5Q13144 721 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 MTF1Q14872 753 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 DEPDC1Q5TB30 811 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ABRAXAS1Q6UWZ7 409 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 C11orf74Q86VG3 221 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 MICALL2Q8IY33 904 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 IQCKQ8N0W5 287 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TTC8Q8TAM2 541 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 GPBP1L1Q9HC44 474 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 VAT1LQ9HCJ6 419 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 RIC8BQ9NVN3 520 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 K7ENM7 598 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 OSBPP22059 807 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 GP5P40197 560 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PDK4Q16654 411 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KIF19Q2TAC6 998 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF786Q8N393 782 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 VPS33AQ96AX1 596 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PARVAQ9NVD7 372 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KLHL3Q9UH77 587 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 GNPTGQ9UJJ9 305 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TET3O43151 1660 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 RAD51BO15315 384 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ASS1P00966 412 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ATP6V1B1P15313 513 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 COILP38432 576 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 VCPP55072 806 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SLC13A5Q86YT5 568 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ERI1Q8IV48 349 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TPCN2Q8NHX9 752 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms