RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 SLC20A1Q8WUM9 679 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 DDX1Q92499 740 aaKnown RBP12.58□□□□□ -0.4
CLN6-223ENST00000637823 DDX27Q96GQ7 796 aaKnown RBP12.58□□□□□ -0.4
CLN6-223ENST00000637823 MMS19Q96T76 1030 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 TSGA10Q9BZW7 698 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 SDCBP2Q9H190 292 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 KANSL3Q9P2N6 904 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 NENFQ9UMX5 172 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 PCDHB7Q9Y5E2 793 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 ATP8B3O60423 1300 aa12.58□□□□□ -0.4
CLN6-223ENST00000637823 FNDC1Q4ZHG4 1894 aaPredicted RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 KRT86O43790 486 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 PAEPP09466 180 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 GZMAP12544 262 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 IBSPP21815 317 aaPredicted RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 AFF1P51825 1210 aaKnown RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 CDH8P55286 799 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 LILRA4P59901 499 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 INCA1Q0VD86 236 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 KIF5AQ12840 1032 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 IKBKEQ14164 716 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 ARHGAP29Q52LW3 1261 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 NOMO2Q5JPE7 1267 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 CNKSR3Q6P9H4 555 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 NYAP1Q6ZVC0 841 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 DPH6Q7L8W6 267 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 UBE2Q1Q7Z7E8 422 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 OLIG1Q8TAK6 271 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 LNX1Q8TBB1 728 aaPredicted RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 URGCPQ8TCY9 931 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 UROC1Q96N76 676 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 SMYD3Q9H7B4 428 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 GOLGA2P5Q9HBQ8 144 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 LZTFL1Q9NQ48 299 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 RRAGDQ9NQL2 400 aaPredicted RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 INTUQ9ULD6 942 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 LRFN2Q9ULH4 789 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 BARX2Q9UMQ3 279 aaPredicted RBP12.57□□□□□ -0.4
CLN6-223ENST00000637823 SNX9Q9Y5X1 595 aa12.57□□□□□ -0.4
CLN6-223ENST00000637823 ALPK3Q96L96 1907 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TRIM43BA6NCK2 446 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 HOXA2O43364 376 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 HUS1O60921 280 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 RTN2O75298 545 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 CILPO75339 1184 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 SLC34A2O95436 690 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 POMCP01189 267 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 MMEP08473 750 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 EN2P19622 333 aaPredicted RBP12.56□□□□□ -0.4
CLN6-223ENST00000637823 GNA15P30679 374 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 ARHGAP25P42331 645 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 RAP1GAPP47736 663 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 FMO1Q01740 532 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TUSC3Q13454 348 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TCTN1Q2MV58 587 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 CLLU1OSQ5K130 101 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TAF3Q5VWG9 929 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TRIM72Q6ZMU5 477 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 LIMS2Q7Z4I7 341 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 DEFB128Q7Z7B8 93 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 ZNF606Q8WXB4 792 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 RSPH1Q8WYR4 309 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 TRIM43Q96BQ3 446 aaPredicted RBP12.56□□□□□ -0.4
CLN6-223ENST00000637823 PCDHB18PQ96TA0 734 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 DNAI2Q9GZS0 605 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 ACP6Q9NPH0 428 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 SEPT11Q9NVA2 429 aaKnown RBP12.56□□□□□ -0.4
CLN6-223ENST00000637823 KIAA1257Q9ULG3 409 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 INPP5FQ9Y2H2 1132 aa12.56□□□□□ -0.4
CLN6-223ENST00000637823 LTBP2Q14767 1821 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 A0A0U1RQJ8 604 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 RCCD1A6NED2 376 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 PODXLO00592 558 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 SPTLC1O15269 473 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 THAP12O43422 761 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 MED7O43513 233 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 TACC1O75410 805 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 CALCAP01258 141 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 H2AFZP0C0S5 128 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 RAG1P15918 1043 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 CLCNKBP51801 687 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 RAD23BP54727 409 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 UPP1Q16831 310 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 SOWAHAQ2M3V2 549 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 MFSD5Q6N075 450 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 PPP1R2P3Q6NXS1 205 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 DCLRE1AQ6PJP8 1040 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 H2AFVQ71UI9 128 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 UNC93AQ86WB7 457 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 NPAS4Q8IUM7 802 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 CRIPAKQ8N1N5 446 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 TOP6BLQ8N6T0 577 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 SLC4A11Q8NBS3 891 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 APPL2Q8NEU8 664 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 WHAMMQ8TF30 809 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 ATRIPQ8WXE1 791 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 TMEM176AQ96HP8 235 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 C16orf45Q96MC5 204 aaPredicted RBP12.55□□□□□ -0.4
CLN6-223ENST00000637823 LACRTQ9GZZ8 138 aa12.55□□□□□ -0.4
CLN6-223ENST00000637823 ISCUQ9H1K1 167 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms