RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 INSL5Q9Y5Q6 135 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 NOTCH4Q99466 2003 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 SCN1AP35498 2009 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 SYKP43405 635 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 TAF6P49848 677 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 ADCY1Q08828 1119 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 GPR17Q13304 367 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 FBXL6Q8N531 539 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 CACTINQ8WUQ7 758 aaKnown RBP20.78■□□□□ 0.92
CLN3-260ENST00000637578 GBP4Q96PP9 640 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 KIAA1586Q9HCI6 787 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 PDE11AQ9HCR9 933 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 AGPAT3Q9NRZ7 376 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 HSPBP1Q9NZL4 362 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 DSEQ9UL01 958 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 DUSP12Q9UNI6 340 aa20.78■□□□□ 0.92
CLN3-260ENST00000637578 ZNF318Q5VUA4 2279 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 CPB1P15086 417 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 TFAMQ00059 246 aaKnown RBP20.77■□□□□ 0.92
CLN3-260ENST00000637578 HTR4Q13639 388 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 PABPC1LQ4VXU2 614 aaKnown RBP20.77■□□□□ 0.92
CLN3-260ENST00000637578 SLC44A3Q8N4M1 653 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 C1orf127Q8N9H9 656 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 ITFG1Q8TB96 612 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 RSAD2Q8WXG1 361 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 FGF13Q92913 245 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 KCNH6Q9H252 994 aa20.77■□□□□ 0.92
CLN3-260ENST00000637578 ZNF233A6NK53 670 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 KPNA7A9QM74 516 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 CYB561D2O14569 222 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 PRPF40AO75400 957 aaKnown RBP20.76■□□□□ 0.91
CLN3-260ENST00000637578 LRG1P02750 347 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 MYL1P05976 194 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 RHOP08100 348 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 PTPN2P17706 415 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 PNPLA4P41247 253 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 CBWD2Q8IUF1 395 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 RTP3Q9BQQ7 232 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 SLC39A2Q9NP94 309 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 OR4Q2P0C623 313 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 SLC5A9Q2M3M2 681 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 SCARA3Q6AZY7 606 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 C12orf56Q8IXR9 622 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 CGNQ9P2M7 1197 aaKnown RBP20.76■□□□□ 0.91
CLN3-260ENST00000637578 ITGA11Q9UKX5 1188 aa20.76■□□□□ 0.91
CLN3-260ENST00000637578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.75■□□□□ 0.91
CLN3-260ENST00000637578 MICAL2O94851 1124 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 PDGFBP01127 241 aaPredicted RBP20.75■□□□□ 0.91
CLN3-260ENST00000637578 PSMD2Q13200 908 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 SURF1Q15526 300 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 SV2CQ496J9 727 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 PRSS36Q5K4E3 855 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 NPAS3Q8IXF0 933 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 LRRC52Q8N7C0 313 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 OR10T2Q8NGX3 314 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 ZNF560Q96MR9 790 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 TMEM209Q96SK2 561 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 CRISPLD1Q9H336 500 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 INTS13Q9NVM9 706 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 CEP72Q9P209 647 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 HSFX1Q9UBD0 423 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 SIX4Q9UIU6 781 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 AGAP1Q9UPQ3 857 aa20.75■□□□□ 0.91
CLN3-260ENST00000637578 ZNF202O95125 648 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 ITGB3P05106 788 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 POLR2BP30876 1174 aaKnown RBP20.74■□□□□ 0.91
CLN3-260ENST00000637578 UBE2HP62256 183 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 FAM160A1Q05DH4 1040 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 STK4Q13043 487 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 KNOP1Q1ED39 458 aaKnown RBP20.74■□□□□ 0.91
CLN3-260ENST00000637578 WSCD1Q658N2 575 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 CENPPQ6IPU0 288 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 SUGP1Q8IWZ8 645 aaKnown RBP20.74■□□□□ 0.91
CLN3-260ENST00000637578 NELFCDQ8IXH7 590 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 FMR1NBQ8N0W7 255 aaPredicted RBP20.74■□□□□ 0.91
CLN3-260ENST00000637578 ENGASEQ8NFI3 743 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 TMEM174Q8WUU8 243 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 FAM84AQ96KN4 292 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 ZCWPW1Q9H0M4 648 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 NUMBLQ9Y6R0 609 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 ZDBF2Q9HCK1 2354 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 PTPRJQ12913 1337 aa20.74■□□□□ 0.91
CLN3-260ENST00000637578 MTMR11A4FU01 709 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 NARSO43776 548 aaKnown RBP20.73■□□□□ 0.91
CLN3-260ENST00000637578 EPHA5P54756 1037 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 TWF1Q12792 350 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 SNW1Q13573 536 aaKnown RBP20.73■□□□□ 0.91
CLN3-260ENST00000637578 SNRNP35Q16560 246 aaKnown RBP20.73■□□□□ 0.91
CLN3-260ENST00000637578 KMT5BQ4FZB7 885 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 POTEHQ6S545 545 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 PARM1Q6UWI2 310 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 METTL23Q86XA0 190 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 CSGALNACT2Q8N6G5 542 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 KIAA0895Q8NCT3 520 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 FGF14Q92915 247 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 PGLYRP2Q96PD5 576 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 MTMR12Q9C0I1 747 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 GDAP2Q9NXN4 497 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 GDE1Q9NZC3 331 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 MRPS23Q9Y3D9 190 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms