RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 METTL23Q86XA0 190 aa12.92□□□□□ -0.34
UPF3B-204ENST00000619445 C2orf15Q8WU43 125 aaKnown RBP12.92□□□□□ -0.34
UPF3B-204ENST00000619445 HAPLN2Q9GZV7 340 aa12.92□□□□□ -0.34
UPF3B-204ENST00000619445 YIPF1Q9Y548 306 aa12.92□□□□□ -0.34
UPF3B-204ENST00000619445 PCDHGA2Q9Y5H1 932 aa12.92□□□□□ -0.34
UPF3B-204ENST00000619445 STYXL1Q9Y6J8 313 aa12.92□□□□□ -0.34
UPF3B-204ENST00000619445 MORC2Q9Y6X9 1032 aaPredicted RBP12.92□□□□□ -0.34
UPF3B-204ENST00000619445 PATJQ8NI35 1801 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 CACNA1AO00555 2505 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 IL18RAPO95256 599 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 CYP11A1P05108 521 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 SPAG1Q07617 926 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 C9orf57Q5W0N0 161 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 MAMSTRQ6ZN01 415 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 CCDC73Q6ZRK6 1079 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 ERMP1Q7Z2K6 904 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 MFSD6LQ8IWD5 586 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 THEM5Q8N1Q8 247 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 FAM212AQ96EL1 285 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 SENP8Q96LD8 212 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 SLITRK6Q9H5Y7 841 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 CEP72Q9P209 647 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 AGO2Q9UKV8 859 aaKnown RBP12.91□□□□□ -0.34
UPF3B-204ENST00000619445 SRPRBQ9Y5M8 271 aaKnown RBP12.91□□□□□ -0.34
UPF3B-204ENST00000619445 DMDP11532 3685 aa12.91□□□□□ -0.34
UPF3B-204ENST00000619445 ANO9A1A5B4 782 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 PIRO00625 290 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ZNF263O14978 683 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 LDHAP00338 332 aaKnown RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 MYL4P12829 197 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 FCARP24071 287 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 PNPLA4P41247 253 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 TAF6P49848 677 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 NRLP54845 237 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 DUSP4Q13115 394 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 VEPH1Q14D04 833 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ARHGAP15Q53QZ3 475 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 RRAGBQ5VZM2 374 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 JADE1Q6IE81 842 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 CENPPQ6IPU0 288 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 SV2BQ7L1I2 683 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ZNF720Q7Z2F6 126 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 YAF2Q8IY57 180 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 GPR161Q8N6U8 529 aaKnown RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ST13P5Q8NFI4 369 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ZSCAN18Q8TBC5 510 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ATRIPQ8WXE1 791 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 POMGNT1Q8WZA1 660 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 RUBCNQ92622 972 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 SECISBP2LQ93073 1101 aaKnown RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 TCEAL4Q96EI5 215 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 INTS4Q96HW7 963 aaKnown RBP12.9□□□□□ -0.34
UPF3B-204ENST00000619445 ZNF560Q96MR9 790 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 FIZ1Q96SL8 496 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 OBP2AQ9NY56 170 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 PCDHB13Q9Y5F0 798 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 R4GN57 208 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 TCHHQ07283 1943 aa12.9□□□□□ -0.34
UPF3B-204ENST00000619445 CEP250Q9BV73 2442 aa12.9□□□□□ -0.35
UPF3B-204ENST00000619445 ANK1P16157 1881 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 MTMR11A4FU01 709 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 WEE1P30291 646 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 NMT1P30419 496 aaKnown RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 CCR2P41597 374 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 SV2CQ496J9 727 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 SLC39A4Q6P5W5 647 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 CSGALNACT1Q8TDX6 532 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 PSMG2Q969U7 264 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 GCNAQ96QF7 691 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 ACCSQ96QU6 501 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 PLA2G2FQ9BZM2 168 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 LRRC27Q9C0I9 530 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 ZSCAN16Q9H4T2 348 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 C8orf33Q9H7E9 229 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 MRPL44Q9H9J2 332 aaKnown RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 ZNF334Q9HCZ1 680 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 OLFML3Q9NRN5 406 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 HEBP1Q9NRV9 189 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 ZSCAN32Q9NX65 697 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 TIMM13Q9Y5L4 95 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-204ENST00000619445 SCN1AP35498 2009 aa12.89□□□□□ -0.35
UPF3B-204ENST00000619445 DPYSL4O14531 572 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 KIAA0391O15091 583 aaKnown RBP12.88□□□□□ -0.35
UPF3B-204ENST00000619445 CHADO15335 359 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 NFICP08651 508 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
UPF3B-204ENST00000619445 TARSP26639 723 aaKnown RBP12.88□□□□□ -0.35
UPF3B-204ENST00000619445 CDC25CP30307 473 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 GDI1P31150 447 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 ID4P47928 161 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 ACOT2P49753 483 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 GRIN1Q05586 938 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 PTPAQ15257 358 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 VITQ6UXI7 678 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 STXBP4Q6ZWJ1 553 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 DCP1BQ8IZD4 617 aaKnown RBP12.88□□□□□ -0.35
UPF3B-204ENST00000619445 HS6ST3Q8IZP7 471 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 SHKBP1Q8TBC3 707 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 SPPL2BQ8TCT7 592 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms