RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 KIF2AO00139 706 aaPredicted RBP15.24■□□□□ 0.03
USP39-220ENST00000613444 KRT86O43790 486 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 CILPO75339 1184 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 EOMESO95936 686 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 P4HA1P13674 534 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 IGFBP6P24592 240 aaPredicted RBP15.24■□□□□ 0.03
USP39-220ENST00000613444 LRRC26Q2I0M4 334 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 LIMS2Q7Z4I7 341 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 RNF169Q8NCN4 708 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 VWCEQ96DN2 955 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 TWNKQ96RR1 684 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 RPS6KC1Q96S38 1066 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 TSGA10Q9BZW7 698 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 ISCUQ9H1K1 167 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 FAM124BQ9H5Z6 455 aaPredicted RBP15.24■□□□□ 0.03
USP39-220ENST00000613444 UBN1Q9NPG3 1134 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 SLC38A7Q9NVC3 462 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 CACNG4Q9UBN1 327 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 HMGXB4Q9UGU5 601 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 TUBB4AP04350 444 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 CFHP08603 1231 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 GZMAP12544 262 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 GNA15P30679 374 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 CYP2C18P33260 490 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 RAD23BP54727 409 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 CCL23P55773 120 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 YWHAEP62258 255 aaKnown RBP15.24■□□□□ 0.03
USP39-220ENST00000613444 ZNF394Q53GI3 561 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 SYT10Q6XYQ8 523 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 PPP1R12CQ9BZL4 782 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 GDAP2Q9NXN4 497 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 INTUQ9ULD6 942 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 ATP11BQ9Y2G3 1177 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 SNX9Q9Y5X1 595 aa15.24■□□□□ 0.03
USP39-220ENST00000613444 ENPP3O14638 875 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 GALCP54803 685 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 LILRA4P59901 499 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 GNG11P61952 73 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 TNNC1P63316 161 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 FAM43BQ6ZT52 329 aaPredicted RBP15.23■□□□□ 0.03
USP39-220ENST00000613444 ZNF606Q8WXB4 792 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 ELOVL4Q9GZR5 314 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 LUC7LQ9NQ29 371 aaKnown RBP15.23■□□□□ 0.03
USP39-220ENST00000613444 SEPT11Q9NVA2 429 aaKnown RBP15.23■□□□□ 0.03
USP39-220ENST00000613444 PAXBP1Q9Y5B6 917 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 NME7Q9Y5B8 376 aa15.23■□□□□ 0.03
USP39-220ENST00000613444 BTNL10A8MVZ5 291 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 TMCO5BA8MYB1 307 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 KPNA7A9QM74 516 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 KIF5CO60282 957 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 CYP1A1P04798 512 aaPredicted RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 UNGP13051 313 aaPredicted RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 PNPLA4P41247 253 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 SOWAHAQ2M3V2 549 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 CLLU1OSQ5K130 101 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 CRIPAKQ8N1N5 446 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 SLC4A11Q8NBS3 891 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 TFAP2BQ92481 460 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 SEPT8Q92599 483 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 APBB2Q92870 758 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 ZNF560Q96MR9 790 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 MMS19Q96T76 1030 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 MYO1AQ9UBC5 1043 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 BARX2Q9UMQ3 279 aaPredicted RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 PARNO95453 639 aaKnown RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 POMCP01189 267 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 H2AFZP0C0S5 128 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 IBSPP21815 317 aaPredicted RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 TAF6P49848 677 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 CLCNKBP51801 687 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 GRIK3Q13003 919 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 CLEC16AQ2KHT3 1053 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 DNTTIP2Q5QJE6 756 aaKnown RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 H2AFVQ71UI9 128 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 TXLNBQ8N3L3 684 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 MRPL45Q9BRJ2 306 aaKnown RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 PAAF1Q9BRP4 392 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 DNAI1Q9UI46 699 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.22■□□□□ 0.03
USP39-220ENST00000613444 ALPK3Q96L96 1907 aa15.22■□□□□ 0.03
USP39-220ENST00000613444 LTBP2Q14767 1821 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 MACROD2A1Z1Q3 448 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 RTN2O75298 545 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 FTLP02792 175 aaPredicted RBP15.21■□□□□ 0.03
USP39-220ENST00000613444 PAEPP09466 180 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 CLTBP09497 229 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 CAPN2P17655 700 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 UPP1Q16831 310 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 ZNF569Q5MCW4 686 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 NECAB2Q7Z6G3 386 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 SLC35F6Q8N357 371 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 C3orf58Q8NDZ4 430 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 KBTBD7Q8WVZ9 684 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 MCOLN1Q9GZU1 580 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 ELAC1Q9H777 363 aaKnown RBP15.21■□□□□ 0.03
USP39-220ENST00000613444 TMEM161AQ9NX61 479 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 CAPN6Q9Y6Q1 641 aa15.21■□□□□ 0.03
USP39-220ENST00000613444 FNDC1Q4ZHG4 1894 aaPredicted RBP15.21■□□□□ 0.03
USP39-220ENST00000613444 TSC2P49815 1807 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms