RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 FAM161BQ96MY7 647 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 IMPG2Q9BZV3 1241 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 MTMR12Q9C0I1 747 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 CXCL16Q9H2A7 254 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 PRDM12Q9H4Q4 367 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 ALG13Q9NP73 1137 aaKnown RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 NGRNQ9NPE2 291 aaKnown RBP10.83□□□□□ -0.68
UPF1-213ENST00000601981 ENTPD7Q9NQZ7 604 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 VWA8A3KMH1 1905 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 ATG2AQ2TAZ0 1938 aa10.83□□□□□ -0.68
UPF1-213ENST00000601981 GOLGA6L9A6NEM1 432 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 USP27XA6NNY8 438 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 LRRIQ3A6PVS8 624 aaPredicted RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 KIF2AO00139 706 aaPredicted RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 B4GALT3O60512 393 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 N4BP1O75113 896 aaKnown RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 SOD2P04179 222 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 ITGB3P05106 788 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 HNRNPH3P31942 346 aaKnown RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 GTF2H1P32780 548 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 GLUD2P49448 558 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 KCNMA1Q12791 1236 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 CETN1Q12798 172 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 SMC1AQ14683 1233 aaKnown RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 GRIN2CQ14957 1233 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 USP41Q3LFD5 358 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 C9orf57Q5W0N0 161 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 LMBRD2Q68DH5 695 aaPredicted RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 DSTYKQ6XUX3 929 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 TRAPPC11Q7Z392 1133 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 VPS52Q8N1B4 723 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 LRRC52Q8N7C0 313 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 APPL2Q8NEU8 664 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 SPPL3Q8TCT6 385 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 HASPINQ8TF76 798 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 SLC35C1Q96A29 364 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 MRPL38Q96DV4 380 aaKnown RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 PPP1R13BQ96KQ4 1090 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 HERC2P3Q9BVR0 1158 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 MMRN2Q9H8L6 949 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 PLCB1Q9NQ66 1216 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 ZNHIT6Q9NWK9 470 aaKnown RBP10.82□□□□□ -0.68
UPF1-213ENST00000601981 MARCH5Q9NX47 278 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 CEP72Q9P209 647 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 CHD9Q3L8U1 2897 aa10.82□□□□□ -0.68
UPF1-213ENST00000601981 MYO7AQ13402 2215 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 ANO9A1A5B4 782 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 SOWAHDA6NJG2 315 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 PIRO00625 290 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 SYN3O14994 580 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 GRM6O15303 877 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 TUBB4AP04350 444 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 ODC1P11926 461 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 P4HA1P13674 534 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 FOSL2P15408 326 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 IGFBP4P22692 258 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 POLR2BP30876 1174 aaKnown RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 ATICP31939 592 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 MXI1P50539 228 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 MCCD1P59942 119 aaPredicted RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 CLDN10P78369 228 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 CDK17Q00537 523 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 KRT39Q6A163 491 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 RAD9BQ6WBX8 426 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 NYAP1Q6ZVC0 841 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 SPRED2Q7Z698 418 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 TMEM173Q86WV6 379 aaPredicted RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 GPR65Q8IYL9 337 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 C1orf127Q8N9H9 656 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 OR5B17Q8NGF7 314 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 RABGGTAQ92696 567 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 TCF25Q9BQ70 676 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 PAAF1Q9BRP4 392 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 TTPALQ9BTX7 342 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 LSM14BQ9BX40 385 aaKnown RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 NUCKS1Q9H1E3 243 aaKnown RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 TMEM8AQ9HCN3 771 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.81□□□□□ -0.68
UPF1-213ENST00000601981 MRPL17Q9NRX2 175 aaKnown RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 FAM207AQ9NSI2 230 aaPredicted RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 CACNG4Q9UBN1 327 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 DSEQ9UL01 958 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 AGAP1Q9UPQ3 857 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 PPP2R2CQ9Y2T4 447 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 DAAM1Q9Y4D1 1078 aa10.81□□□□□ -0.68
UPF1-213ENST00000601981 PRRC2BQ5JSZ5 2229 aaKnown RBP10.81□□□□□ -0.68
UPF1-213ENST00000601981 MTCL1Q9Y4B5 1905 aaKnown RBP10.8□□□□□ -0.68
UPF1-213ENST00000601981 TRANK1O15050 2925 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 TSC2P49815 1807 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 EPOPA6NHQ4 379 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 KPNA7A9QM74 516 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 H7C4K7 107 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 EPHB6O15197 1021 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 NOL4O94818 638 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 CCDC175P0C221 793 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 TRIM49P0CI25 452 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 TRIM49CP0CI26 452 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 CTSAP10619 480 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 PIK3CAP42336 1068 aa10.8□□□□□ -0.68
UPF1-213ENST00000601981 GUCY2FP51841 1108 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms