RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 NDRG2Q9UN36 371 aaKnown RBP13.56□□□□□ -0.24
UPF1-203ENST00000594504 SLC27A5Q9Y2P5 690 aa13.56□□□□□ -0.24
UPF1-203ENST00000594504 NCANO14594 1321 aa13.56□□□□□ -0.24
UPF1-203ENST00000594504 CACNA1IQ9P0X4 2223 aa13.56□□□□□ -0.24
UPF1-203ENST00000594504 MYO15AQ9UKN7 3530 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ANK1P16157 1881 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ANKRD63C9JTQ0 380 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 H0YCG3 227 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 K7ENM7 598 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 FAM189A1O60320 539 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 OAZ2O95190 189 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 CMA1P23946 247 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 NMT1P30419 496 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 YWHAHQ04917 246 aaPredicted RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 PPP2R3AQ06190 1150 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 DUSP4Q13115 394 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ENOX2Q16206 610 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 SLC39A4Q6P5W5 647 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ZC3H14Q6PJT7 736 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 ZNF852Q6ZMS4 543 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ELMOD1Q8N336 334 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 CLDN23Q96B33 292 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 DHX58Q96C10 678 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 RMDN1Q96DB5 314 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 TRMT61BQ9BVS5 477 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 LRRC27Q9C0I9 530 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 TNMDQ9H2S6 317 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 RPF1Q9H9Y2 349 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 MAGEF1Q9HAY2 307 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 PARVGQ9HBI0 331 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 ZNF334Q9HCZ1 680 aaPredicted RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 UBQLN1Q9UMX0 589 aaKnown RBP13.55□□□□□ -0.24
UPF1-203ENST00000594504 CACNA1HO95180 2353 aa13.55□□□□□ -0.24
UPF1-203ENST00000594504 MYMKA6NI61 221 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 TISP43B9A030 160 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 SPTLC1O15269 473 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 POLR2DO15514 142 aaKnown RBP13.54□□□□□ -0.24
UPF1-203ENST00000594504 TRAK2O60296 914 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 SOAT2O75908 522 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 MICAL2O94851 1124 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 CYP3A5P20815 502 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 SCP2P22307 547 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 GDI1P31150 447 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 ZC2HC1CQ53FD0 456 aaPredicted RBP13.54□□□□□ -0.24
UPF1-203ENST00000594504 JADE1Q6IE81 842 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 DYMQ7RTS9 669 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 TTC9BQ8N6N2 239 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 BEST2Q8NFU1 509 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 SHKBP1Q8TBC3 707 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 ZSCAN18Q8TBC5 510 aaPredicted RBP13.54□□□□□ -0.24
UPF1-203ENST00000594504 SMARCD2Q92925 531 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 KCNN1Q92952 543 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 RSPRY1Q96DX4 576 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 FIZ1Q96SL8 496 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 LRRC3Q9BY71 257 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 DNAJC25Q9H1X3 360 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 IKZF4Q9H2S9 585 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 KBTBD4Q9NVX7 518 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 CHMP5Q9NZZ3 219 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 FBXO4Q9UKT5 387 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 YIPF1Q9Y548 306 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 TICRRQ7Z2Z1 1910 aa13.54□□□□□ -0.24
UPF1-203ENST00000594504 A0A1W2PQ27 194 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 A0A1W2PQ64 194 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 A0A1W2PQD8 194 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 A0A1W2PRU2 124 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 HNRNPDLO14979 420 aaKnown RBP13.53□□□□□ -0.24
UPF1-203ENST00000594504 OGTO15294 1046 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 KINO60870 393 aaKnown RBP13.53□□□□□ -0.24
UPF1-203ENST00000594504 ADRB2P07550 413 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 NFICP08651 508 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 PSMC3P17980 439 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 ABCD1P33897 745 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 AARSP49588 968 aaKnown RBP eCLIP13.53□□□□□ -0.24
UPF1-203ENST00000594504 ACOT2P49753 483 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 EPHA5P54756 1037 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 AMPD3Q01432 767 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 MTAPQ13126 283 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 GPR17Q13304 367 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 ZNF528Q3MIS6 628 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 STXBP5Q5T5C0 1151 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 SPATA1Q5VX52 437 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 USP37Q86T82 979 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 TMC8Q8IU68 726 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 MAP4K3Q8IVH8 894 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 ZNF687Q8N1G0 1237 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 ATAD1Q8NBU5 361 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 DNAJC19Q96DA6 116 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 SENP8Q96LD8 212 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 NELL2Q99435 816 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 MSTO1Q9BUK6 570 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 GDPD2Q9HCC8 539 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 ASAH2Q9NR71 780 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 SEL1LQ9UBV2 794 aa13.53□□□□□ -0.24
UPF1-203ENST00000594504 CPSF3Q9UKF6 684 aaKnown RBP13.53□□□□□ -0.24
UPF1-203ENST00000594504 A0A0B4J269 797 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 FAM237AA0A1B0GTK4 181 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 MTMR11A4FU01 709 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 HEPACAM2A8MVW5 462 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 NCAM2O15394 837 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms