RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CILPO75339 1184 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 DGKIO75912 1065 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 FGBP02675 491 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 CCDC175P0C221 793 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 FGFR1P11362 822 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 CYP11B1P15538 503 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 EIF4A3P38919 411 aaKnown RBP16.32■□□□□ 0.2
SS18-215ENST00000580642 USP8P40818 1118 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 CLCNKBP51801 687 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 AFF1P51825 1210 aaKnown RBP16.32■□□□□ 0.2
SS18-215ENST00000580642 RNASELQ05823 741 aaKnown RBP16.32■□□□□ 0.2
SS18-215ENST00000580642 STILQ15468 1287 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 TMEM270Q6UE05 265 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 RAD9BQ6WBX8 426 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 TRIM72Q6ZMU5 477 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 ZNF662Q6ZS27 426 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 COLGALT2Q8IYK4 626 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 RBBP8NLQ8NC74 664 aaPredicted RBP16.32■□□□□ 0.2
SS18-215ENST00000580642 EPS8L1Q8TE68 723 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 ARID3AQ99856 593 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 MTIF3Q9H2K0 278 aaKnown RBP16.32■□□□□ 0.2
SS18-215ENST00000580642 B3GAT3O94766 335 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 ALDH2P05091 517 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 WARSP23381 471 aaKnown RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 MSNP26038 577 aaKnown RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 KIF11P52732 1056 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 WDR5P61964 334 aaKnown RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 CDR2Q01850 454 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 ARID5AQ03989 594 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 SCARA3Q6AZY7 606 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 ZNF571Q7Z3V5 609 aaPredicted RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 CMTR2Q8IYT2 770 aaKnown RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 PHOSPHO2Q8TCD6 241 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 MMS19Q96T76 1030 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 AGPAT1Q99943 283 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 COLEC11Q9BWP8 271 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 NT5C1AQ9BXI3 368 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 GOLGA2P5Q9HBQ8 144 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.31■□□□□ 0.23e-16■■■■■ 317.3
SS18-215ENST00000580642 NOCTQ9UK39 431 aaKnown RBP16.31■□□□□ 0.2
SS18-215ENST00000580642 POLIQ9UNA4 740 aa16.31■□□□□ 0.2
SS18-215ENST00000580642 M0QZQ0 153 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 PPEF2O14830 753 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 SPTLC1O15269 473 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 MED7O43513 233 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 CYP11A1P05108 521 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 WEE2P0C1S8 567 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 ODC1P11926 461 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 GZMAP12544 262 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 TYMPP19971 482 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 TNFAIP3P21580 790 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 LHX1P48742 406 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 ELAVL2Q12926 359 aaKnown RBP16.3■□□□□ 0.2
SS18-215ENST00000580642 SOWAHAQ2M3V2 549 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.3■□□□□ 0.2
SS18-215ENST00000580642 C7orf61Q8IZ16 206 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 SLC30A5Q8TAD4 765 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 BADQ92934 168 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 ZNF689Q96CS4 500 aaPredicted RBP16.3■□□□□ 0.2
SS18-215ENST00000580642 TMEM176AQ96HP8 235 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 LBHD1Q9BQE6 289 aaPredicted RBP16.3■□□□□ 0.2
SS18-215ENST00000580642 SMYD3Q9H7B4 428 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 STK39Q9UEW8 545 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 INTUQ9ULD6 942 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 PYCARDQ9ULZ3 195 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 ADGRG1Q9Y653 693 aa16.3■□□□□ 0.2
SS18-215ENST00000580642 LTBP2Q14767 1821 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 CASTOR2A6NHX0 329 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 CYB561D2O14569 222 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 GABRDO14764 452 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 DDHD2O94830 711 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 VDRP11473 427 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 GNA15P30679 374 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 DSTYKQ6XUX3 929 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 SLC47A2Q86VL8 602 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 CRYBG2Q8N1P7 616 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 HERVK_113Q902F9 699 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 DDX1Q92499 740 aaKnown RBP16.29■□□□□ 0.2
SS18-215ENST00000580642 TNIP3Q96KP6 325 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 SUSD3Q96L08 255 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 SENP8Q96LD8 212 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 OXCT2Q9BYC2 517 aaPredicted RBP16.29■□□□□ 0.2
SS18-215ENST00000580642 ZNF518BQ9C0D4 1074 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 SDCBP2Q9H190 292 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.29■□□□□ 0.2
SS18-215ENST00000580642 ADAMTS1Q9UHI8 967 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 PCDHGC3Q9UN70 934 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 NR2E3Q9Y5X4 410 aa16.29■□□□□ 0.2
SS18-215ENST00000580642 TET1Q8NFU7 2136 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 TBKBP1A7MCY6 615 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 SYN3O14994 580 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 LSM8O95777 96 aaKnown RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 TUBB4AP04350 444 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 PLEKP08567 350 aaPredicted RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 PNMA6AP0CW24 399 aaPredicted RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 CD58P19256 250 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 GNL1P36915 607 aaPredicted RBP16.28■□□□□ 0.2
SS18-215ENST00000580642 RAD23BP54727 409 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 SCARA5Q6ZMJ2 495 aa16.28■□□□□ 0.2
SS18-215ENST00000580642 C16orf59Q7L2K0 433 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms