RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR4Q2P0C623 313 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 TMEM191BP0C7N4 346 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 PNPLA4P41247 253 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 CYP2J2P51589 502 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 PSMD2Q13200 908 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 SURF1Q15526 300 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 KNOP1Q1ED39 458 aaKnown RBP25.79■■□□□ 1.72
SHMT1-206ENST00000579558 UBALD2Q8IYN6 164 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 FAM84AQ96KN4 292 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 DNMT3BQ9UBC3 853 aaKnown RBP25.79■■□□□ 1.72
SHMT1-206ENST00000579558 ITGA11Q9UKX5 1188 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 MAFFQ9ULX9 164 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 AGAP1Q9UPQ3 857 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 INSL5Q9Y5Q6 135 aa25.79■■□□□ 1.72
SHMT1-206ENST00000579558 TRIOO75962 3097 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 KPNA7A9QM74 516 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 STK4Q13043 487 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 PABPC1LQ4VXU2 614 aaKnown RBP25.78■■□□□ 1.72
SHMT1-206ENST00000579558 LMBRD2Q68DH5 695 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-206ENST00000579558 HFE2Q6ZVN8 426 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 METTL23Q86XA0 190 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 RDH13Q8NBN7 331 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 KIAA0895Q8NCT3 520 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 ANKRD36BP1Q96IX9 119 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 MTMR12Q9C0I1 747 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 SMOC2Q9H3U7 446 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 KCNK12Q9HB15 430 aa25.78■■□□□ 1.72
SHMT1-206ENST00000579558 CGNQ9P2M7 1197 aaKnown RBP25.78■■□□□ 1.72
SHMT1-206ENST00000579558 RPN1P04843 607 aaKnown RBP25.77■■□□□ 1.72
SHMT1-206ENST00000579558 KRT19P08727 400 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 PRR29P0C7W0 189 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 MYBPC2Q14324 1141 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 SNRNP35Q16560 246 aaKnown RBP25.77■■□□□ 1.72
SHMT1-206ENST00000579558 KRBA2Q6ZNG9 492 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 CSGALNACT2Q8N6G5 542 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 XXYLT1Q8NBI6 393 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 BORCS6Q96GS4 357 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 PGLYRP2Q96PD5 576 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 INTS13Q9NVM9 706 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 IGSF9Q9P2J2 1179 aa25.77■■□□□ 1.72
SHMT1-206ENST00000579558 ZNF202O95125 648 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 TNNC2P02585 160 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 LAMP2P13473 410 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 BFSP1Q12934 665 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 GPR17Q13304 367 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 C12orf56Q8IXR9 622 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 LRRC52Q8N7C0 313 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 CCDC47Q96A33 483 aaKnown RBP25.76■■□□□ 1.71
SHMT1-206ENST00000579558 TMEM209Q96SK2 561 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 CDH7Q9ULB5 785 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 ZFP37Q9Y6Q3 630 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-206ENST00000579558 PTPRJQ12913 1337 aa25.76■■□□□ 1.71
SHMT1-206ENST00000579558 GOLGA6L4A6NEF3 574 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 RHOP08100 348 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 RBP5P82980 135 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 TWF1Q12792 350 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 TDGQ13569 410 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 WSCD1Q658N2 575 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 BMP8AQ7Z5Y6 402 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 THEM5Q8N1Q8 247 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 ELMOD1Q8N336 334 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 OR5B17Q8NGF7 314 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 OR10T2Q8NGX3 314 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 CXorf38Q8TB03 319 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 ITFG1Q8TB96 612 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 GOLGA5Q8TBA6 731 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 PBXIP1Q96AQ6 731 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 ASIC4Q96FT7 647 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 SIX4Q9UIU6 781 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 HCN4Q9Y3Q4 1203 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 R3HCC1Q9Y3T6 440 aaKnown RBP25.75■■□□□ 1.71
SHMT1-206ENST00000579558 NOTCH4Q99466 2003 aa25.75■■□□□ 1.71
SHMT1-206ENST00000579558 VNN2O95498 520 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 PTPN2P17706 415 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 CYP24A1Q07973 514 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 DPYDQ12882 1025 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 DUOXA2Q1HG44 320 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 SCARA3Q6AZY7 606 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 WDR49Q8IV35 697 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 RSAD2Q8WXG1 361 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 FGF13Q92913 245 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 MFSD14AQ96MC6 490 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 CORO1BQ9BR76 489 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 MRPS23Q9Y3D9 190 aaKnown RBP25.74■■□□□ 1.71
SHMT1-206ENST00000579558 YIPF1Q9Y548 306 aa25.74■■□□□ 1.71
SHMT1-206ENST00000579558 MTMR11A4FU01 709 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 EXOC3O60645 756 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 DLATP10515 647 aaKnown RBP25.73■■□□□ 1.71
SHMT1-206ENST00000579558 DUSP4Q13115 394 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 PSMD6Q15008 389 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 NXPE3Q969Y0 559 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 CCDC34Q96HJ3 373 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 FNBP1Q96RU3 617 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 RTP3Q9BQQ7 232 aa25.73■■□□□ 1.71
SHMT1-206ENST00000579558 RHOBTB3O94955 611 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 IQCEQ6IPM2 695 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 ATAD1Q8NBU5 361 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 ING5Q8WYH8 240 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 CCDC127Q96BQ5 260 aa25.72■■□□□ 1.71
SHMT1-206ENST00000579558 ZNF512Q96ME7 567 aaPredicted RBP25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms