RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ZNF570Q96NI8 536 aa16.55■□□□□ 0.24
NUP88-207ENST00000573584 SMC6Q96SB8 1091 aa16.55■□□□□ 0.24
NUP88-207ENST00000573584 SLC38A10Q9HBR0 1119 aa16.55■□□□□ 0.24
NUP88-207ENST00000573584 MAP3K20Q9NYL2 800 aaKnown RBP16.55■□□□□ 0.24
NUP88-207ENST00000573584 USH1CQ9Y6N9 552 aa16.55■□□□□ 0.24
NUP88-207ENST00000573584 PRPF4O43172 522 aaKnown RBP eCLIP16.54■□□□□ 0.24
NUP88-207ENST00000573584 C4BPAP04003 597 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 ACOT2P49753 483 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 LIG4P49917 911 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 YARSP54577 528 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 WNT7BP56706 349 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 CLDN10P78369 228 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 GPS1Q13098 491 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 CUL2Q13617 745 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 TAS1R3Q7RTX0 852 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 PHF13Q86YI8 300 aaPredicted RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 TDRPQ86YL5 185 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 RCOR2Q8IZ40 523 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 C4orf33Q8N1A6 199 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 LARGE2Q8N3Y3 721 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 FEZF2Q8TBJ5 459 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 UTP4Q969X6 686 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 SENP7Q9BQF6 1050 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 VPS37BQ9H9H4 285 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 PXMP2Q9NR77 195 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 PARVAQ9NVD7 372 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 ATP5HO75947 161 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 TJP3O95049 919 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 HMGB2P26583 209 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 PSMD6Q15008 389 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 CNKSR1Q969H4 720 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 MRRFQ96E11 262 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 DNAJC5Q9H3Z4 198 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 APOBEC3GQ9HC16 384 aaKnown RBP16.54■□□□□ 0.24
NUP88-207ENST00000573584 BATF3Q9NR55 127 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 CHKBQ9Y259 395 aa16.54■□□□□ 0.24
NUP88-207ENST00000573584 RPA3P35244 121 aaPredicted RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 RPL7AP62424 266 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 EAPPQ56P03 285 aaPredicted RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 MFSD7Q6UXD7 560 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 MCPH1Q8NEM0 835 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 AKT1S1Q96B36 256 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 SLITRK1Q96PX8 696 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 IP6K2Q9UHH9 426 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 GRID1Q9ULK0 1009 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 SMG5Q9UPR3 1016 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 WDR46O15213 610 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 DGAT1O75907 488 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 VNN1O95497 513 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 TCF4P15884 667 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 CA4P22748 312 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 TARSP26639 723 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 ALDH3A1P30838 453 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 NLRP11P59045 1033 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 C1QBPQ07021 282 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 DGKZQ13574 1117 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 MOGSQ13724 837 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 ZBED8Q8IZ13 594 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 ALLCQ8N6M5 410 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 RDM1Q8NG50 284 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 LRRC8CQ8TDW0 803 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 ATP6V0A1Q93050 837 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 RBM41Q96IZ5 413 aaKnown RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 TMEM237Q96Q45 408 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 HAO1Q9UJM8 370 aa16.53■□□□□ 0.24
NUP88-207ENST00000573584 ZBTB12Q9Y330 459 aaPredicted RBP16.53■□□□□ 0.24
NUP88-207ENST00000573584 SLC18A1P54219 525 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 PDK4Q16654 411 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 SWSAP1Q6NVH7 229 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 BZW1Q7L1Q6 419 aaKnown RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 SUPT20HQ8NEM7 779 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 ADAM33Q9BZ11 813 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 LRMDAQ9H2I8 198 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 XPNPEP1Q9NQW7 623 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 SLC5A4Q9NY91 659 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 SENP1Q9P0U3 644 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 ARHGAP28Q9P2N2 729 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 CTDP1Q9Y5B0 961 aaPredicted RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 PTPRJQ12913 1337 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 KRT1P04264 644 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 PAX7P23759 505 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 PARP6Q2NL67 630 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 ANKRD20A2Q5SQ80 823 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 ANKRD20A1Q5TYW2 823 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 ANKRD20A3Q5VUR7 823 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 DRICH1Q6PGQ1 229 aaPredicted RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 RGS9BPQ6ZS82 235 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 KRT27Q7Z3Y8 459 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 RBBP8NLQ8NC74 664 aaPredicted RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 PDLIM7Q9NR12 457 aa16.52■□□□□ 0.24
NUP88-207ENST00000573584 SEPT9Q9UHD8 586 aaPredicted RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 AGO2Q9UKV8 859 aaKnown RBP16.52■□□□□ 0.24
NUP88-207ENST00000573584 EDF1O60869 148 aaKnown RBP16.52■□□□□ 0.23
NUP88-207ENST00000573584 DCTN3O75935 186 aa16.52■□□□□ 0.23
NUP88-207ENST00000573584 WFS1O76024 890 aa16.52■□□□□ 0.23
NUP88-207ENST00000573584 STBD1O95210 358 aa16.52■□□□□ 0.23
NUP88-207ENST00000573584 SP4Q02446 784 aa16.52■□□□□ 0.23
NUP88-207ENST00000573584 MORF4L2Q15014 288 aa16.52■□□□□ 0.23
NUP88-207ENST00000573584 POLR3FQ9H1D9 316 aaPredicted RBP16.52■□□□□ 0.23
NUP88-207ENST00000573584 IVNS1ABPQ9Y6Y0 642 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms