RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 RSPH1Q8WYR4 309 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 CDCA3Q99618 268 aaPredicted RBP10.4□□□□□ -0.74
CIITA-208ENST00000572665 MIPEPQ99797 713 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 ADAM2Q99965 735 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 KCNH6Q9H252 994 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 ATP6V0A4Q9HBG4 840 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 ERVK-5Q9HDB9 667 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 TMEM161AQ9NX61 479 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 PUF60Q9UHX1 559 aaKnown RBP10.4□□□□□ -0.74
CIITA-208ENST00000572665 ST3GAL5Q9UNP4 418 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 RAXQ9Y2V3 346 aa10.4□□□□□ -0.74
CIITA-208ENST00000572665 TBKBP1A7MCY6 615 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 CPLX1O14810 134 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 MBTPS2O43462 519 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 GAS7O60861 476 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 SLITRK5O94991 958 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 ITGB1P05556 798 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 IFNAR1P17181 557 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 LAG3P18627 525 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 IBSPP21815 317 aaPredicted RBP10.39□□□□□ -0.75
CIITA-208ENST00000572665 RPS6KB1P23443 525 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 GBP1P32455 592 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 PPM1AP35813 382 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 NLRP5P59047 1200 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 ADAM15Q13444 863 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 DDR2Q16832 855 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TMEM266Q2M3C6 531 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 LETMD1Q6P1Q0 360 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 RTN4RL1Q86UN2 441 aaPredicted RBP10.39□□□□□ -0.75
CIITA-208ENST00000572665 THNSL1Q8IYQ7 743 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TMEM151AQ8N4L1 468 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 EFHBQ8N7U6 833 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 RDM1Q8NG50 284 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 ZBTB10Q96DT7 871 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 SCLT1Q96NL6 688 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 RIT2Q99578 217 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TEKT3Q9BXF9 490 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 SLC26A6Q9BXS9 759 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TMX1Q9H3N1 280 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 C7orf69Q9H7B7 122 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 ZSWIM4Q9H7M6 989 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TLE6Q9H808 572 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 CD320Q9NPF0 282 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 TLR9Q9NR96 1032 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 DACT1Q9NYF0 836 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 GABBR1Q9UBS5 961 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 AKT3Q9Y243 479 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 NOC2LQ9Y3T9 749 aaKnown RBP10.39□□□□□ -0.75
CIITA-208ENST00000572665 BDP1A6H8Y1 2624 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 XIRP2A4UGR9 3374 aa10.39□□□□□ -0.75
CIITA-208ENST00000572665 PLXNA4Q9HCM2 1894 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 C9IYK1 514 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 DKC1O60832 514 aaKnown RBP eCLIP10.38□□□□□ -0.75
CIITA-208ENST00000572665 CSPG5O95196 566 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 C22orf31O95567 290 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 XBP1P17861 261 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 LTBRP36941 435 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 DNM2P50570 870 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 KRT17Q04695 432 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 SSRP1Q08945 709 aaKnown RBP10.38□□□□□ -0.75
CIITA-208ENST00000572665 COASYQ13057 564 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 KIZQ2M2Z5 673 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 LRCH2Q5VUJ6 765 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 GALNT17Q6IS24 598 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 EFCAB12Q6NXP0 572 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 TOP6BLQ8N6T0 577 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 CCDC136Q96JN2 1154 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 SLC6A18Q96N87 628 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 UIMC1Q96RL1 719 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 JPH2Q9BR39 696 aaPredicted RBP10.38□□□□□ -0.75
CIITA-208ENST00000572665 AGXT2Q9BYV1 514 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 INO80BQ9C086 356 aaPredicted RBP10.38□□□□□ -0.75
CIITA-208ENST00000572665 TMEM117Q9H0C3 514 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 TPSG1Q9NRR2 321 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 RAPGEFL1Q9UHV5 662 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 LZTS1Q9Y250 596 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 SNX14Q9Y5W7 946 aa10.38□□□□□ -0.75
CIITA-208ENST00000572665 HMX2A2RU54 273 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 K7ELQ4 463 aaPredicted RBP10.37□□□□□ -0.75
CIITA-208ENST00000572665 TBX10O75333 385 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 GPR32O75388 356 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 FGF18O76093 207 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 DEXIO95424 95 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 EYA4O95677 639 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 VTNP04004 478 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 NRIP1P48552 1158 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 NLRP11P59045 1033 aaKnown RBP10.37□□□□□ -0.75
CIITA-208ENST00000572665 CLUL1Q15846 466 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 PKN1Q16512 942 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 PRR23CQ6ZRP0 262 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 TRMT1LQ7Z2T5 733 aaKnown RBP10.37□□□□□ -0.75
CIITA-208ENST00000572665 FAM228AQ86W67 206 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 EXOC8Q8IYI6 725 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 LRRC43Q8N309 656 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 RIN3Q8TB24 985 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 GATA6Q92908 595 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 PHKBQ93100 1093 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 MFSD14AQ96MC6 490 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 DUSP23Q9BVJ7 150 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 MRPL9Q9BYD2 267 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms