RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 IP6K2Q9UHH9 426 aa12□□□□□ -0.49
CLN3-238ENST00000569430 ZNF711Q9Y462 761 aa12□□□□□ -0.49
CLN3-238ENST00000569430 PCNTO95613 3336 aa12□□□□□ -0.49
CLN3-238ENST00000569430 KDM4FA0A1W2PPD8 638 aa12□□□□□ -0.49
CLN3-238ENST00000569430 M0R2N6 131 aa12□□□□□ -0.49
CLN3-238ENST00000569430 CST8O60676 142 aa12□□□□□ -0.49
CLN3-238ENST00000569430 MAP3K6O95382 1288 aa12□□□□□ -0.49
CLN3-238ENST00000569430 HNRNPCP07910 306 aaKnown RBP eCLIP12□□□□□ -0.49
CLN3-238ENST00000569430 ATP6V1C1P21283 382 aa12□□□□□ -0.49
CLN3-238ENST00000569430 SLC34A1Q06495 639 aa12□□□□□ -0.49
CLN3-238ENST00000569430 MTMR1Q13613 665 aa12□□□□□ -0.49
CLN3-238ENST00000569430 TFDP1Q14186 410 aa12□□□□□ -0.49
CLN3-238ENST00000569430 DCAF12L1Q5VU92 463 aa12□□□□□ -0.49
CLN3-238ENST00000569430 CYP4X1Q8N118 509 aa12□□□□□ -0.49
CLN3-238ENST00000569430 TMEM35BQ8NCS4 154 aa12□□□□□ -0.49
CLN3-238ENST00000569430 RNF217Q8TC41 542 aa12□□□□□ -0.49
CLN3-238ENST00000569430 NUF2Q9BZD4 464 aa12□□□□□ -0.49
CLN3-238ENST00000569430 EBF2Q9HAK2 575 aa12□□□□□ -0.49
CLN3-238ENST00000569430 FIS1Q9Y3D6 152 aa12□□□□□ -0.49
CLN3-238ENST00000569430 SEC23IPQ9Y6Y8 1000 aaKnown RBP12□□□□□ -0.49
CLN3-238ENST00000569430 TMEM150BA6NC51 233 aa12□□□□□ -0.49
CLN3-238ENST00000569430 K7ERI5 159 aa12□□□□□ -0.49
CLN3-238ENST00000569430 BANF1O75531 89 aa12□□□□□ -0.49
CLN3-238ENST00000569430 ZBED1O96006 694 aa12□□□□□ -0.49
CLN3-238ENST00000569430 SETSIPP0DME0 302 aa12□□□□□ -0.49
CLN3-238ENST00000569430 ARP10275 920 aa12□□□□□ -0.49
CLN3-238ENST00000569430 RASA2Q15283 850 aa12□□□□□ -0.49
CLN3-238ENST00000569430 KCNT1Q5JUK3 1230 aa12□□□□□ -0.49
CLN3-238ENST00000569430 RNF43Q68DV7 783 aa12□□□□□ -0.49
CLN3-238ENST00000569430 C1orf228Q6PIY5 440 aa12□□□□□ -0.49
CLN3-238ENST00000569430 ICA1LQ8NDH6 482 aa12□□□□□ -0.49
CLN3-238ENST00000569430 EPS8L1Q8TE68 723 aa12□□□□□ -0.49
CLN3-238ENST00000569430 DEPDC1BQ8WUY9 529 aa12□□□□□ -0.49
CLN3-238ENST00000569430 FBXO6Q9NRD1 293 aaPredicted RBP12□□□□□ -0.49
CLN3-238ENST00000569430 XPO7Q9UIA9 1087 aaKnown RBP12□□□□□ -0.49
CLN3-238ENST00000569430 PRR12Q9ULL5 1215 aa12□□□□□ -0.49
CLN3-238ENST00000569430 PCDHB2Q9Y5E7 798 aa12□□□□□ -0.49
CLN3-238ENST00000569430 SYNJ2BP-COX16A0A087WUM0 186 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 PPEF1O14829 653 aaPredicted RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 ATP13A4Q4VNC1 1196 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 SLFN11Q7Z7L1 901 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 ZNF483Q8TF39 744 aaPredicted RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 OLFM3Q96PB7 478 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 PAFAH2Q99487 392 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 BTBD10Q9BSF8 475 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 MSTO1Q9BUK6 570 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 PARVAQ9NVD7 372 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 COX16Q9P0S2 106 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 NKX1-2Q9UD57 310 aaPredicted RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 TRIM49D1C9J1S8 452 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 KRT38O76015 456 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 SLITRK3O94933 977 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 ETS2P15036 469 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 YWHABP31946 246 aaKnown RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 MARSP56192 900 aaKnown RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 CENPCQ03188 943 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 CYTH1Q15438 398 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 GEN1Q17RS7 908 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 FAXCQ5TGI0 409 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 CDC42EP5Q6NZY7 148 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 ZNF668Q96K58 619 aaPredicted RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 DENND2DQ9H6A0 471 aaPredicted RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 PCMTD2Q9NV79 361 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 PDP2Q9P2J9 529 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 DNPEPQ9ULA0 475 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 USP20Q9Y2K6 914 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 A0A1W2PPM1 405 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 SPDYE5A6NIY4 337 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 PIK3R2O00459 728 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 DKC1O60832 514 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLN3-238ENST00000569430 APRTP07741 180 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 EIF3EP60228 445 aaKnown RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 CHI3L2Q15782 390 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 RCOR2Q8IZ40 523 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 FAM71DQ8N9W8 422 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 FBXO36Q8NEA4 188 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 TBC1D16Q8TBP0 767 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 RAB6BQ9NRW1 208 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 NMRK1Q9NWW6 199 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 SLC5A4Q9NY91 659 aa11.99□□□□□ -0.49
CLN3-238ENST00000569430 R3HDM2Q9Y2K5 976 aaKnown RBP11.99□□□□□ -0.49
CLN3-238ENST00000569430 NCANO14594 1321 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 FCHO1O14526 889 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 NOL3O60936 208 aaKnown RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 SPATA31C1P0DKV0 1188 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ARL1P40616 181 aaPredicted RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 MMP14P50281 582 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 ZNF200P98182 395 aaPredicted RBP11.98□□□□□ -0.49
CLN3-238ENST00000569430 CCNG2Q16589 344 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 NBPF20Q3BBV1 942 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SPOPLQ6IQ16 392 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 KRT80Q6KB66 452 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SCUBE1Q8IWY4 988 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 PAF1Q8N7H5 531 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 MAB21L3Q8N8X9 362 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 CEP120Q8N960 986 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 FAXDC2Q96IV6 333 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SCYL1Q96KG9 808 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 SENP7Q9BQF6 1050 aa11.98□□□□□ -0.49
CLN3-238ENST00000569430 VPS11Q9H270 941 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms