RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ENGASEQ8NFI3 743 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 HDAC7Q8WUI4 952 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 SCFD1Q8WVM8 642 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 POMGNT1Q8WZA1 660 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 FGF14Q92915 247 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 ACCSQ96QU6 501 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 GPR62Q9BZJ7 368 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 CUEDC2Q9H467 287 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 SSX2IPQ9Y2D8 614 aa15.09■□□□□ 0.01
CLN3-235ENST00000568497 A0A0B4J269 797 aa15.08■□□□□ 0
CLN3-235ENST00000568497 NCAM2O15394 837 aa15.08■□□□□ 0
CLN3-235ENST00000568497 PRPF40AO75400 957 aaKnown RBP15.08■□□□□ 0
CLN3-235ENST00000568497 C1RP00736 705 aa15.08■□□□□ 0
CLN3-235ENST00000568497 PIGRP01833 764 aa15.08■□□□□ 0
CLN3-235ENST00000568497 ALDH2P05091 517 aa15.08■□□□□ 0
CLN3-235ENST00000568497 NFICP08651 508 aa15.08■□□□□ 0
CLN3-235ENST00000568497 RPL17P18621 184 aaKnown RBP15.08■□□□□ 0
CLN3-235ENST00000568497 BRCC3P46736 316 aa15.08■□□□□ 0
CLN3-235ENST00000568497 CLCNKBP51801 687 aa15.08■□□□□ 0
CLN3-235ENST00000568497 AMPD3Q01432 767 aa15.08■□□□□ 0
CLN3-235ENST00000568497 EHHADHQ08426 723 aa15.08■□□□□ 0
CLN3-235ENST00000568497 GRIK3Q13003 919 aa15.08■□□□□ 0
CLN3-235ENST00000568497 LMBRD2Q68DH5 695 aaPredicted RBP15.08■□□□□ 0
CLN3-235ENST00000568497 PARM1Q6UWI2 310 aa15.08■□□□□ 0
CLN3-235ENST00000568497 CD300LGQ6UXG3 332 aa15.08■□□□□ 0
CLN3-235ENST00000568497 CRELD2Q6UXH1 353 aaPredicted RBP15.08■□□□□ 0
CLN3-235ENST00000568497 ALKAL1Q6UXT8 129 aa15.08■□□□□ 0
CLN3-235ENST00000568497 PRR23CQ6ZRP0 262 aa15.08■□□□□ 0
CLN3-235ENST00000568497 GLYCTKQ8IVS8 523 aa15.08■□□□□ 0
CLN3-235ENST00000568497 DDX1Q92499 740 aaKnown RBP15.08■□□□□ 0
CLN3-235ENST00000568497 ZNF707Q96C28 371 aaPredicted RBP15.08■□□□□ 0
CLN3-235ENST00000568497 IPO9Q96P70 1041 aaKnown RBP15.08■□□□□ 0
CLN3-235ENST00000568497 PPP1R10Q96QC0 940 aaKnown RBP15.08■□□□□ 0
CLN3-235ENST00000568497 FAM213AQ9BRX8 229 aa15.08■□□□□ 0
CLN3-235ENST00000568497 SEMA4GQ9NTN9 838 aa15.08■□□□□ 0
CLN3-235ENST00000568497 ZFP37Q9Y6Q3 630 aaPredicted RBP15.08■□□□□ 0
CLN3-235ENST00000568497 TGFB1I1O43294 461 aa15.07■□□□□ 0
CLN3-235ENST00000568497 GDF9O60383 454 aa15.07■□□□□ 0
CLN3-235ENST00000568497 SOD2P04179 222 aa15.07■□□□□ 0
CLN3-235ENST00000568497 RPN1P04843 607 aaKnown RBP15.07■□□□□ 0
CLN3-235ENST00000568497 THP07101 528 aa15.07■□□□□ 0
CLN3-235ENST00000568497 PMLP29590 882 aa15.07■□□□□ 0
CLN3-235ENST00000568497 DPYDQ12882 1025 aa15.07■□□□□ 0
CLN3-235ENST00000568497 N4BP2L1Q5TBK1 243 aaPredicted RBP15.07■□□□□ 0
CLN3-235ENST00000568497 RSPO2Q6UXX9 243 aaPredicted RBP15.07■□□□□ 0
CLN3-235ENST00000568497 TPRG1Q6ZUI0 275 aa15.07■□□□□ 0
CLN3-235ENST00000568497 EPM2AIP1Q7L775 607 aaPredicted RBP15.07■□□□□ 0
CLN3-235ENST00000568497 PALB2Q86YC2 1186 aa15.07■□□□□ 0
CLN3-235ENST00000568497 RDH13Q8NBN7 331 aa15.07■□□□□ 0
CLN3-235ENST00000568497 COL26A1Q96A83 441 aa15.07■□□□□ 0
CLN3-235ENST00000568497 KIF12Q96FN5 646 aa15.07■□□□□ 0
CLN3-235ENST00000568497 TMEM175Q9BSA9 504 aa15.07■□□□□ 0
CLN3-235ENST00000568497 FAM126AQ9BYI3 521 aaPredicted RBP15.07■□□□□ 0
CLN3-235ENST00000568497 ST6GALNAC4Q9H4F1 302 aa15.07■□□□□ 0
CLN3-235ENST00000568497 UBN1Q9NPG3 1134 aa15.07■□□□□ 0
CLN3-235ENST00000568497 OLFML3Q9NRN5 406 aa15.07■□□□□ 0
CLN3-235ENST00000568497 EXOC1Q9NV70 894 aa15.07■□□□□ 0
CLN3-235ENST00000568497 SEL1LQ9UBV2 794 aa15.07■□□□□ 0
CLN3-235ENST00000568497 AGO2Q9UKV8 859 aaKnown RBP15.07■□□□□ 0
CLN3-235ENST00000568497 CNOT1A5YKK6 2376 aaKnown RBP15.07■□□□□ 0
CLN3-235ENST00000568497 ANK1P16157 1881 aa15.07■□□□□ 0
CLN3-235ENST00000568497 RALGAPA1Q6GYQ0 2036 aa15.07■□□□□ 0
CLN3-235ENST00000568497 H0YCG3 227 aa15.06■□□□□ 0
CLN3-235ENST00000568497 OGTO15294 1046 aa15.06■□□□□ 0
CLN3-235ENST00000568497 RETP07949 1114 aa15.06■□□□□ 0
CLN3-235ENST00000568497 FSHRP23945 695 aa15.06■□□□□ 0
CLN3-235ENST00000568497 TARSP26639 723 aaKnown RBP15.06■□□□□ 0
CLN3-235ENST00000568497 GLUD2P49448 558 aa15.06■□□□□ 0
CLN3-235ENST00000568497 CYP2J2P51589 502 aa15.06■□□□□ 0
CLN3-235ENST00000568497 YARSP54577 528 aaKnown RBP15.06■□□□□ 0
CLN3-235ENST00000568497 PFKPQ01813 784 aa15.06■□□□□ 0
CLN3-235ENST00000568497 TUSC3Q13454 348 aa15.06■□□□□ 0
CLN3-235ENST00000568497 JADE1Q6IE81 842 aa15.06■□□□□ 0
CLN3-235ENST00000568497 PRSS55Q6UWB4 352 aaPredicted RBP15.06■□□□□ 0
CLN3-235ENST00000568497 CBWD2Q8IUF1 395 aa15.06■□□□□ 0
CLN3-235ENST00000568497 ELMO3Q96BJ8 720 aa15.06■□□□□ 0
CLN3-235ENST00000568497 HERC2P3Q9BVR0 1158 aa15.06■□□□□ 0
CLN3-235ENST00000568497 RPF1Q9H9Y2 349 aaKnown RBP15.06■□□□□ 0
CLN3-235ENST00000568497 RXFP1Q9HBX9 757 aa15.06■□□□□ 0
CLN3-235ENST00000568497 PRMT8Q9NR22 394 aaPredicted RBP15.06■□□□□ 0
CLN3-235ENST00000568497 KANSL3Q9P2N6 904 aa15.06■□□□□ 0
CLN3-235ENST00000568497 CPSF3Q9UKF6 684 aaKnown RBP15.06■□□□□ 0
CLN3-235ENST00000568497 PCDHB13Q9Y5F0 798 aa15.06■□□□□ 0
CLN3-235ENST00000568497 LRP3O75074 770 aa15.05■□□□□ -0
CLN3-235ENST00000568497 TADA2AO75478 443 aa15.05■□□□□ -0
CLN3-235ENST00000568497 PROS1P07225 676 aa15.05■□□□□ -0
CLN3-235ENST00000568497 ADRB2P07550 413 aa15.05■□□□□ -0
CLN3-235ENST00000568497 CLTAP09496 248 aa15.05■□□□□ -0
CLN3-235ENST00000568497 MTAPQ13126 283 aa15.05■□□□□ -0
CLN3-235ENST00000568497 HSP90AA2PQ14568 343 aaPredicted RBP15.05■□□□□ -0
CLN3-235ENST00000568497 POSTNQ15063 836 aa15.05■□□□□ -0
CLN3-235ENST00000568497 XKR4Q5GH76 650 aa15.05■□□□□ -0
CLN3-235ENST00000568497 FUT10Q6P4F1 479 aa15.05■□□□□ -0
CLN3-235ENST00000568497 CNNM4Q6P4Q7 775 aa15.05■□□□□ -0
CLN3-235ENST00000568497 MTSS1LQ765P7 747 aa15.05■□□□□ -0
CLN3-235ENST00000568497 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.05■□□□□ -0
CLN3-235ENST00000568497 CEP57Q86XR8 500 aa15.05■□□□□ -0
CLN3-235ENST00000568497 EFCAB13Q8IY85 973 aa15.05■□□□□ -0
CLN3-235ENST00000568497 ZNF507Q8TCN5 953 aa15.05■□□□□ -0
CLN3-235ENST00000568497 EEF2KMTQ96G04 330 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms