RNA–Protein interactions for RNA: ENST00000563219.1

SHCBP1-202, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 3

Gene SHCBP1, Length 485 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-202ENST00000563219 LRRC55Q6ZSA7 311 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 MED25Q71SY5 747 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 PPP1R3BQ86XI6 285 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 PDSS2Q86YH6 399 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 RHOT2Q8IXI1 618 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 TTC17Q96AE7 1141 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 DCLRE1CQ96SD1 692 aaKnown RBP4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 NEU1Q99519 415 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 KRTAP9-8Q9BYQ0 159 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 CFAP97Q9P2B7 532 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 CHST2Q9Y4C5 530 aa4.08□□□□□ -1.76
SHCBP1-202ENST00000563219 CDHR4A6H8M9 788 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 PRSS29PA6NIE9 313 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 APAF1O14727 1248 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 FRS3O43559 492 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 MATN4O95460 622 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 LDHAP00338 332 aaKnown RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 GNAI3P08754 354 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 NBPF7P0C2Y1 421 aaPredicted RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 CKBP12277 381 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 RHCEP18577 417 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 LAG3P18627 525 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 SLC6A2P23975 617 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 APOBEC3AP31941 199 aaPredicted RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 GNAI1P63096 354 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 RHDQ02161 417 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 TAP1Q03518 808 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 KRTAP1-1Q07627 177 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 KIF22Q14807 665 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 LLGL1Q15334 1064 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 CNN3Q15417 329 aaKnown RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 TIGD2Q4W5G0 525 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 COBLL1Q53SF7 1204 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 SWSAP1Q6NVH7 229 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 KCNV1Q6PIU1 500 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 MAEAQ7L5Y9 396 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 SKAP1Q86WV1 359 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 FITM2Q8N6M3 262 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 BRIX1Q8TDN6 353 aaKnown RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 PARD3BQ8TEW8 1205 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 NUP133Q8WUM0 1156 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 MYEOVQ96EZ4 313 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 MRGPRX1Q96LB2 322 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 SARGQ9BW04 601 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 C1orf43Q9BWL3 253 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 SLC46A2Q9BY10 475 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 GSTO2Q9H4Y5 243 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 ZNF768Q9H5H4 540 aaKnown RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 BRD9Q9H8M2 597 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 ARMT1Q9H993 441 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 ATP6V0A4Q9HBG4 840 aa4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 EIF2B4Q9UI10 523 aaKnown RBP4.07□□□□□ -1.76
SHCBP1-202ENST00000563219 PHGDHO43175 533 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 PRSS23O95084 383 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 LMNAP02545 664 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 GJB1P08034 283 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 IFIT2P09913 472 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 RARBP10826 455 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 TRIM27P14373 513 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 CACNB3P54284 484 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 FAM193AP78312 1265 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 FAM189BP81408 668 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 SLFN5Q08AF3 891 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 C10orf62Q5T681 223 aaPredicted RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 DPY19L2P1Q6NXN4 242 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 DARS2Q6PI48 645 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 GDF7Q7Z4P5 450 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 SH2D3CQ8N5H7 860 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 AOPEPQ8N6M6 819 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 FAM156AQ8NDB6 213 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 VPS37AQ8NEZ2 397 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 SCAMP4Q969E2 229 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 C22orf23Q9BZE7 217 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 REXO4Q9GZR2 422 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 TOR3AQ9H497 397 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 ZMAT3Q9HA38 289 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 GPR35Q9HC97 309 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 SARS2Q9NP81 518 aaKnown RBP4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 KLHL11Q9NVR0 708 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 PCDHA1Q9Y5I3 950 aa4.06□□□□□ -1.76
SHCBP1-202ENST00000563219 CENPVL1A0A0U1RR11 272 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 GAGE12BA1L429 117 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 GRID2IPA4D2P6 1211 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 GAGE12HA6NDE8 117 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 TMEM200CA6NKL6 621 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 GOLIM4O00461 696 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 AGFG2O95081 481 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 CHEK2O96017 543 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 AHSGP02765 367 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 SPATA31D3P0C874 917 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 ARFIP2P53365 341 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 RNASE9P60153 205 aaKnown RBP4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 NOMO3P69849 1222 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 TCF15Q12870 199 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 SEMA5AQ13591 1074 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 NOMO2Q5JPE7 1267 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 UTP14CQ5TAP6 766 aaKnown RBP4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 RNF220Q5VTB9 566 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 SPATA31D4Q6ZUB0 917 aa4.05□□□□□ -1.76
SHCBP1-202ENST00000563219 OR56A1Q8NGH5 318 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms