RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KCNE1P15382 129 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 MAP2K2P36507 400 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ACADSBP45954 432 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 PURAQ00577 322 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 CAV1Q03135 178 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 GABPB1Q06547 395 aaPredicted RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 CRHR2Q13324 411 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 DRP2Q13474 957 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ZNF268Q14587 947 aaPredicted RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 HADHQ16836 314 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 LONRF2Q1L5Z9 754 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 SGO2Q562F6 1265 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 MARCH8Q5T0T0 291 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 CFAP58Q5T655 872 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ALS2CLQ60I27 953 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 PLEKHA7Q6IQ23 1121 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 DNAJC24Q6P3W2 148 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ARCQ7LC44 396 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 UBR7Q8N806 425 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 TTC13Q8NBP0 860 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 C3orf20Q8ND61 904 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 PXYLP1Q8TE99 480 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 STK32AQ8WU08 396 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ZNF606Q8WXB4 792 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 SLCO2A1Q92959 643 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 PGBD4Q96DM1 585 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 KIF12Q96FN5 646 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 HPDLQ96IR7 371 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ZBTB45Q96K62 511 aaPredicted RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 TNIP3Q96KP6 325 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 SNX27Q96L92 541 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 RNPC3Q96LT9 517 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 MMS19Q96T76 1030 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 POP1Q99575 1024 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 TSEN34Q9BSV6 310 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 TRIM62Q9BVG3 475 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 NT5C1AQ9BXI3 368 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 PACSIN1Q9BY11 444 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 FOXP3Q9BZS1 431 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 XYLT2Q9H1B5 865 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 SYNCQ9H7C4 482 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 DPP3Q9NY33 737 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 HESX1Q9UBX0 185 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 ANAPC7Q9UJX3 599 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 AJAP1Q9UKB5 411 aaPredicted RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 NOC2LQ9Y3T9 749 aaKnown RBP7.99□□□□□ -1.13
VPS39-204ENST00000561818 TRPV2Q9Y5S1 764 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 UMODL1Q5DID0 1318 aa7.99□□□□□ -1.13
VPS39-204ENST00000561818 A0A0U1RQJ8 604 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 GOLGA6L10A6NI86 522 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SMAPO00193 183 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 OPA1O60313 960 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 CILPO75339 1184 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 GPR32O75388 356 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 PROSCO94903 275 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 PARNO95453 639 aaKnown RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 VTNP04004 478 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 MYL3P08590 195 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 RHOXF2BP0C7M4 288 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 PNMA6AP0CW24 399 aaPredicted RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 CHRNB2P17787 502 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 CYP2B6P20813 491 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 PTPN7P35236 360 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 PSMC4P43686 418 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 ASPAP45381 313 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 CDR1P51861 262 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 MYL6P60660 151 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 MRPS6P82932 125 aaKnown RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 SP3Q02447 781 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SNX17Q15036 470 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 CNGA2Q16280 664 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 WDR72Q3MJ13 1102 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 XKR4Q5GH76 650 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 BEND6Q5SZJ8 279 aaPredicted RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 JADE1Q6IE81 842 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 DCUN1D2Q6PH85 259 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 ERICH1Q86X53 443 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 KATNAL2Q8IYT4 538 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 TMEM86AQ8N2M4 240 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 MREGQ8N565 214 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 C1orf127Q8N9H9 656 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 C12orf50Q8NA57 414 aaPredicted RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 SLAIN1Q8ND83 568 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 OR5B17Q8NGF7 314 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 EXD1Q8NHP7 514 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 FEZF2Q8TBJ5 459 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 COG1Q8WTW3 980 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SLC20A1Q8WUM9 679 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 ATRIPQ8WXE1 791 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 TATDN2Q93075 761 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 TMEM176AQ96HP8 235 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 UROC1Q96N76 676 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 RHOXF2Q9BQY4 288 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 CELF4Q9BZC1 486 aaKnown RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 HAPLN2Q9GZV7 340 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SETD4Q9NVD3 440 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 GDAP2Q9NXN4 497 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SAGE1Q9NXZ1 904 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 HDAC6Q9UBN7 1215 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms