RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 LRRC52Q8N7C0 313 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 GSTCDQ8NEC7 633 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 WHAMMQ8TF30 809 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 RFFLQ8WZ73 363 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 TFAP2BQ92481 460 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 TWNKQ96RR1 684 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 TSPAN18Q96SJ8 248 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 PCDHGC5Q9Y5F6 944 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 SQORQ9Y6N5 450 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 TRIP11Q15643 1979 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 NCANO14594 1321 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 PIRO00625 290 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 ATN1P54259 1190 aaPredicted RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 GPC5P78333 572 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 MRPL10Q7Z7H8 261 aaKnown RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 PPP1R10Q96QC0 940 aaKnown RBP22.69■■□□□ 1.22
CLN3-209ENST00000561689 TRAIPQ9BWF2 469 aa22.69■■□□□ 1.22
CLN3-209ENST00000561689 A0A0U1RQF3 1178 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 ARL5CA6NH57 179 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 ATMINO43313 823 aaPredicted RBP22.68■■□□□ 1.22
CLN3-209ENST00000561689 NCK2O43639 380 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 PQBP1O60828 265 aaKnown RBP22.68■■□□□ 1.22
CLN3-209ENST00000561689 CILPO75339 1184 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 FTCDO95954 541 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 TFRCP02786 760 aaKnown RBP22.68■■□□□ 1.22
CLN3-209ENST00000561689 CYP1A1P04798 512 aaPredicted RBP22.68■■□□□ 1.22
CLN3-209ENST00000561689 RAD23BP54727 409 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 RBM10P98175 930 aaKnown RBP22.68■■□□□ 1.22
CLN3-209ENST00000561689 AMPD2Q01433 879 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 ELOVL4Q9GZR5 314 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 GOLPH3Q9H4A6 298 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 MIOSQ9NXC5 875 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 RALGAPA2Q2PPJ7 1873 aa22.68■■□□□ 1.22
CLN3-209ENST00000561689 ZNF623O75123 536 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 CD19P15391 556 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 ATF7P17544 494 aaPredicted RBP22.67■■□□□ 1.22
CLN3-209ENST00000561689 CYP3A5P20815 502 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 GTF2F1P35269 517 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLN3-209ENST00000561689 RAB27AP51159 221 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 LRRC8DQ7L1W4 858 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 TPCN2Q8NHX9 752 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 CAGE1Q8TC20 777 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 RPS6KC1Q96S38 1066 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 SEZ6LQ9BYH1 1024 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 CACNG4Q9UBN1 327 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 COG5Q9UP83 839 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 GIT1Q9Y2X7 761 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 SPTLC1O15269 473 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 SRGAP2O75044 1071 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 SELPP16109 830 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 IFI16Q16666 785 aaKnown RBP22.67■■□□□ 1.22
CLN3-209ENST00000561689 PAPD7Q5XG87 772 aaKnown RBP22.67■■□□□ 1.22
CLN3-209ENST00000561689 SLC4A11Q8NBS3 891 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 LRRN4CLQ8ND94 238 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 CDC23Q9UJX2 597 aa22.67■■□□□ 1.22
CLN3-209ENST00000561689 SLU7O95391 586 aaKnown RBP22.66■■□□□ 1.22
CLN3-209ENST00000561689 NSFP46459 744 aaKnown RBP22.66■■□□□ 1.22
CLN3-209ENST00000561689 SCNN1GP51170 649 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 NDST1P52848 882 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 C2CD6Q53TS8 623 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 TRIM72Q6ZMU5 477 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 CTU1Q7Z7A3 348 aaKnown RBP22.66■■□□□ 1.22
CLN3-209ENST00000561689 ZNF653Q96CK0 615 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 TMEM176AQ96HP8 235 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 MRPL45Q9BRJ2 306 aaKnown RBP22.66■■□□□ 1.22
CLN3-209ENST00000561689 CTTNBP2NLQ9P2B4 639 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 SAR1BQ9Y6B6 198 aa22.66■■□□□ 1.22
CLN3-209ENST00000561689 NOMO3P69849 1222 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 INCA1Q0VD86 236 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 PTPROQ16827 1216 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 RTN4RL1Q86UN2 441 aaPredicted RBP22.65■■□□□ 1.22
CLN3-209ENST00000561689 LRRC57Q8N9N7 239 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 CARD6Q9BX69 1037 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 BARX2Q9UMQ3 279 aaPredicted RBP22.65■■□□□ 1.22
CLN3-209ENST00000561689 KPNA7A9QM74 516 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 THP07101 528 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 PAEPP09466 180 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 MNX1P50219 401 aaPredicted RBP22.65■■□□□ 1.22
CLN3-209ENST00000561689 CENPCQ03188 943 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 BFSP2Q13515 415 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 ZNF333Q96JL9 665 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 ZNF560Q96MR9 790 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 TLR10Q9BXR5 811 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 RSAD1Q9HA92 442 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 SLC38A7Q9NVC3 462 aa22.65■■□□□ 1.22
CLN3-209ENST00000561689 IGFBP6P24592 240 aaPredicted RBP22.64■■□□□ 1.21
CLN3-209ENST00000561689 SOWAHAQ2M3V2 549 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 PHLDB2Q86SQ0 1253 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 ECHDC2Q86YB7 292 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 RHOT2Q8IXI1 618 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 MCOLN2Q8IZK6 566 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 HEXIM2Q96MH2 286 aaKnown RBP22.64■■□□□ 1.21
CLN3-209ENST00000561689 PSMB7Q99436 277 aa22.64■■□□□ 1.21
CLN3-209ENST00000561689 PACSIN2Q9UNF0 486 aaPredicted RBP22.64■■□□□ 1.21
CLN3-209ENST00000561689 BUB1BO60566 1050 aaPredicted RBP22.63■■□□□ 1.21
CLN3-209ENST00000561689 CYP1A2P05177 515 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 HSPA8P11142 646 aaKnown RBP22.63■■□□□ 1.21
CLN3-209ENST00000561689 LRPAP1P30533 357 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 PNPLA4P41247 253 aa22.63■■□□□ 1.21
CLN3-209ENST00000561689 TAF6P49848 677 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms