RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 PPP1R10Q96QC0 940 aaKnown RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 GAD1Q99259 594 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 PI4K2AQ9BTU6 479 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 NHEJ1Q9H9Q4 299 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 NXF1Q9UBU9 619 aaKnown RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 PCDHB4Q9Y5E5 795 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SLC4A7Q9Y6M7 1214 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 UMODL1Q5DID0 1318 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 TTC3P53804 2025 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 ANO9A1A5B4 782 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 PIRO00625 290 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 INPPL1O15357 1258 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 LRRN2O75325 713 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 GJB5O95377 273 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 CCDC175P0C221 793 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 FAM163BP0C2L3 166 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 KRT5P13647 590 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 TNFAIP3P21580 790 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 PRKCIP41743 596 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 TAF6P49848 677 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 PDE6CP51160 858 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 SCNN1GP51170 649 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 APBA1Q02410 837 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 TUSC3Q13454 348 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 BMS1Q14692 1282 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 NOMO2Q5JPE7 1267 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 C10orf76Q5T2E6 689 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 PPP1R2P3Q6NXS1 205 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 GJB7Q6PEY0 223 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 DPH6Q7L8W6 267 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 IRF2BP2Q7Z5L9 587 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 RTN4RL1Q86UN2 441 aaPredicted RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 ZNF677Q86XU0 584 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 NPAS4Q8IUM7 802 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 FAM71AQ8IYT1 594 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 LPPQ93052 612 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 C18orf25Q96B23 403 aaPredicted RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 RNPC3Q96LT9 517 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 ZFP42Q96MM3 310 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 ZMAT2Q96NC0 199 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 SAMD11Q96NU1 681 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 MMS19Q96T76 1030 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 RAD9AQ99638 391 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.88□□□□□ -1.31
SPG11-221ENST00000560299 MRPL9Q9BYD2 267 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 OSBPL7Q9BZF2 842 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 XYLT2Q9H1B5 865 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 PDCL3Q9H2J4 239 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 KCNF1Q9H3M0 494 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 RC3H2Q9HBD1 1191 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.88□□□□□ -1.31
SPG11-221ENST00000560299 PLA2G2EQ9NZK7 142 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 LMCD1Q9NZU5 365 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 SIX4Q9UIU6 781 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 INPP5FQ9Y2H2 1132 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 INSL6Q9Y581 213 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 NUB1Q9Y5A7 615 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 EPN1Q9Y6I3 576 aaPredicted RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 TET1Q8NFU7 2136 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 SZT2Q5T011 3432 aa6.88□□□□□ -1.31
SPG11-221ENST00000560299 TDRD15B5MCY1 1934 aaKnown RBP6.88□□□□□ -1.31
SPG11-221ENST00000560299 PDCD11Q14690 1871 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 SOWAHDA6NJG2 315 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 KPNA7A9QM74 516 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 ESPNB1AK53 854 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 EIF3CLB5ME19 914 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 PTGESO14684 152 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 MEFVO15553 781 aaPredicted RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 MED7O43513 233 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 TRAPPC3O43617 180 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 HUS1O60921 280 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 KIF4AO95239 1232 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 NDUFA10O95299 355 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 AMHP03971 560 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 ATP2A2P16615 1042 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 EIF4A3P38919 411 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 KIF11P52732 1056 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 LILRA4P59901 499 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 WDR5P61964 334 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 SLC18A3Q16572 532 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 C9orf50Q5SZB4 431 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 SPOPLQ6IQ16 392 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 WDR59Q6PJI9 974 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 DCLRE1AQ6PJP8 1040 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 TMEM270Q6UE05 265 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 DSTYKQ6XUX3 929 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 METTL23Q86XA0 190 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 TMEM139Q8IV31 216 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 HERC6Q8IVU3 1022 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 APPL2Q8NEU8 664 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 KIAA1524Q8TCG1 905 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 KREMEN1Q96MU8 473 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 EIF3CQ99613 913 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 CHP1Q99653 195 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 BCO2Q9BYV7 579 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 SNX25Q9H3E2 840 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 HAUS4Q9H6D7 363 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 APOBEC3GQ9HC16 384 aaKnown RBP6.87□□□□□ -1.31
SPG11-221ENST00000560299 CISHQ9NSE2 258 aa6.87□□□□□ -1.31
SPG11-221ENST00000560299 SEPT11Q9NVA2 429 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms