RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CHST7Q9NS84 486 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 SAMSN1Q9NSI8 373 aaKnown RBP10.82□□□□□ -0.68
USP3-216ENST00000559873 FANCLQ9NW38 375 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 RAB20Q9NX57 234 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 GDAP2Q9NXN4 497 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 SNX9Q9Y5X1 595 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 CDH23Q9H251 3354 aa10.82□□□□□ -0.68
USP3-216ENST00000559873 PLXNA4Q9HCM2 1894 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 RFXAPO00287 272 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 C2CD2LO14523 706 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 SPTLC1O15269 473 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 NCK2O43639 380 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CXCL14O95715 111 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CYP11A1P05108 521 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 NDUFV1P49821 464 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 ERVFC1P60507 584 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CBWD6Q4V339 395 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 VWA3BQ502W6 1294 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 HSP90AA4PQ58FG1 418 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CBWD3Q5JTY5 395 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CBWD5Q5RIA9 395 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 VARS2Q5ST30 1063 aaKnown RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 CD300LGQ6UXG3 332 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 IRF2BP1Q8IU81 584 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 DHX40Q8IX18 779 aaKnown RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 ADGRF2Q8IZF7 708 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 TTC39CQ8N584 583 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 MRPL43Q8N983 215 aaKnown RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 FAM81BQ96LP2 452 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 NT5C1BQ96P26 610 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 CDX2Q99626 313 aaPredicted RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 NIF3L1Q9GZT8 377 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 XYLT2Q9H1B5 865 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 FAM124BQ9H5Z6 455 aaPredicted RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 GCNT4Q9P109 453 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 FNIP2Q9P278 1114 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 NXF1Q9UBU9 619 aaKnown RBP10.81□□□□□ -0.68
USP3-216ENST00000559873 DPP7Q9UHL4 492 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 COQ4Q9Y3A0 265 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 BACE2Q9Y5Z0 518 aa10.81□□□□□ -0.68
USP3-216ENST00000559873 LAMA2P24043 3122 aaKnown RBP10.8□□□□□ -0.68
USP3-216ENST00000559873 C2orf71A6NGG8 1288 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 OR6C75A6NL08 312 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 OAZ2O95190 189 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 VNN1O95497 513 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 C1RP00736 705 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 CST3P01034 146 aaPredicted RBP10.8□□□□□ -0.68
USP3-216ENST00000559873 TPM3P06753 285 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 FAM163BP0C2L3 166 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 ZNF18P17022 549 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 TBXAS1P24557 533 aaPredicted RBP10.8□□□□□ -0.68
USP3-216ENST00000559873 DNAJB1P25685 340 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 PCSK1P29120 753 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 IRS1P35568 1242 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 LHX1P48742 406 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 YWHAEP62258 255 aaKnown RBP10.8□□□□□ -0.68
USP3-216ENST00000559873 TSPY1Q01534 308 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 CAMK1Q14012 370 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 NCAPHQ15003 741 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 IQCB1Q15051 598 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 KRT31Q15323 416 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 FILIP1LQ4L180 1135 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 CTXN3Q4LDR2 81 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 KIAA0319Q5VV43 1072 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 GBP6Q6ZN66 633 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 MICALL1Q8N3F8 863 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 MYLIPQ8WY64 445 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 B3GALT6Q96L58 329 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 GUCD1Q96NT3 240 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 NDST4Q9H3R1 872 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 TLE6Q9H808 572 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 RXFP1Q9HBX9 757 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 CBX8Q9HC52 389 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 MTMR10Q9NXD2 777 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 MTRRQ9UBK8 725 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 LIMA1Q9UHB6 759 aaKnown RBP10.8□□□□□ -0.68
USP3-216ENST00000559873 L1RE1Q9UN81 338 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 MTCH2Q9Y6C9 303 aa10.8□□□□□ -0.68
USP3-216ENST00000559873 SCN1AP35498 2009 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 PRRC2BQ5JSZ5 2229 aaKnown RBP10.79□□□□□ -0.68
USP3-216ENST00000559873 TACC1O75410 805 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 GLUD1P00367 558 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 CPB1P15086 417 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 KLRC2P26717 231 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 COPB1P53618 953 aaKnown RBP10.79□□□□□ -0.68
USP3-216ENST00000559873 SMARCB1Q12824 385 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 ADGRE1Q14246 886 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 EXOC3L4Q17RC7 722 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 PRSS55Q6UWB4 352 aaPredicted RBP10.79□□□□□ -0.68
USP3-216ENST00000559873 LUZP1Q86V48 1076 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 TMEM130Q8N3G9 435 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 PDCL2Q8N4E4 241 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 LNX1Q8TBB1 728 aaPredicted RBP10.79□□□□□ -0.68
USP3-216ENST00000559873 AUTS2Q8WXX7 1259 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 KLHL5Q96PQ7 755 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 SNX25Q9H3E2 840 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 CYP3A43Q9HB55 503 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 TAB2Q9NYJ8 693 aa10.79□□□□□ -0.68
USP3-216ENST00000559873 TIMM13Q9Y5L4 95 aaPredicted RBP10.79□□□□□ -0.68
USP3-216ENST00000559873 CDY1Q9Y6F8 540 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms