RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NOP14P78316 857 aaKnown RBP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 GJB7Q6PEY0 223 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 PRSS55Q6UWB4 352 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 SCARA5Q6ZMJ2 495 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 OSTM1Q86WC4 334 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 ARHGEF19Q8IW93 802 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 PDCL2Q8N4E4 241 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TAF4BQ92750 862 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 KAT5Q92993 513 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 ARID3AQ99856 593 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TCF25Q9BQ70 676 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 MRPL45Q9BRJ2 306 aaKnown RBP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 ANP32EQ9BTT0 268 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 TTPALQ9BTX7 342 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 SMYD3Q9H7B4 428 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 SIX2Q9NPC8 291 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 RTN4Q9NQC3 1192 aaKnown RBP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 GCNT4Q9P109 453 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 PUF60Q9UHX1 559 aaKnown RBP13.76□□□□□ -0.21
SHMT2-227ENST00000557269 L1RE1Q9UN81 338 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 NME7Q9Y5B8 376 aa13.76□□□□□ -0.21
SHMT2-227ENST00000557269 A0A1B0GTH6 734 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 GTPBP10A4D1E9 387 aaKnown RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 HIDE1A8MVS5 230 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 SYN3O14994 580 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 ADAM12O43184 909 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 CLSTN1O94985 981 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 SERPINC1P01008 464 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 CYP11A1P05108 521 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 WEE2P0C1S8 567 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 CTSAP10619 480 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 RPL17P18621 184 aaKnown RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 GLUD2P49448 558 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 DSG1Q02413 1049 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 UBXN1Q04323 297 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 UBE3AQ05086 875 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 ELAVL2Q12926 359 aaKnown RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 MRPL58Q14197 206 aaKnown RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 ADGRE1Q14246 886 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 NR1I3Q14994 352 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 PTPN14Q15678 1187 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 USP41Q3LFD5 358 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 ZNF667Q5HYK9 610 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 VARS2Q5ST30 1063 aaKnown RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 PHLDB3Q6NSJ2 640 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 TRIM65Q6PJ69 517 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 RSPO2Q6UXX9 243 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 GBP6Q6ZN66 633 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 TOP6BLQ8N6T0 577 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 ANKRD20A12PQ8NF67 263 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 LNX1Q8TBB1 728 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 KBTBD7Q8WVZ9 684 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 RIN2Q8WYP3 895 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 MMS19Q96T76 1030 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 RTP3Q9BQQ7 232 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 TLR9Q9NR96 1032 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 IFNKQ9P0W0 207 aa13.75□□□□□ -0.21
SHMT2-227ENST00000557269 AJAP1Q9UKB5 411 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-227ENST00000557269 TSC2P49815 1807 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 TBC1D4O60343 1298 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 HUS1O60921 280 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 CXCL14O95715 111 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 ODC1P11926 461 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 TYMPP19971 482 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 PAX3P23760 479 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 TNNC1P63316 161 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 CETN1Q12798 172 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 SYCP1Q15431 976 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 EXOC3L4Q17RC7 722 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 WDR44Q5JSH3 913 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 PLPP4Q5VZY2 271 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 KIAA1841Q6NSI8 718 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 RRAGAQ7L523 313 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 TMC7Q7Z402 723 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 ADGRF2Q8IZF7 708 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 MRPL43Q8N983 215 aaKnown RBP13.74□□□□□ -0.21
SHMT2-227ENST00000557269 APPL2Q8NEU8 664 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 MICAL1Q8TDZ2 1067 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 PIK3R5Q8WYR1 880 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 TMEM209Q96SK2 561 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 BCO2Q9BYV7 579 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 IMPG2Q9BZV3 1241 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 NIF3L1Q9GZT8 377 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 ENTPD7Q9NQZ7 604 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 SIK3Q9Y2K2 1263 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 ATG2AQ2TAZ0 1938 aa13.74□□□□□ -0.21
SHMT2-227ENST00000557269 C2orf71A6NGG8 1288 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 GABRDO14764 452 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 EPHB6O15197 1021 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 OAZ2O95190 189 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 TPM2P07951 284 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 LMO2P25791 158 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 CDR1P51861 262 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 UBASH3AP57075 661 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 YWHAHQ04917 246 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-227ENST00000557269 FKBP15Q5T1M5 1219 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 OVOS1Q6IE37 1185 aa13.73□□□□□ -0.21
SHMT2-227ENST00000557269 DPH6Q7L8W6 267 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms