RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TBC1D10AQ9BXI6 508 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 OSBPL8Q9BZF1 889 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 RNPEPL1Q9HAU8 725 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 SAYSD1Q9NPB0 183 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 KANSL3Q9P2N6 904 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 DNPEPQ9ULA0 475 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TBX20Q9UMR3 447 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 STARD13Q9Y3M8 1113 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 WDR81Q562E7 1941 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 COL11A2P13942 1736 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 EXOC1LA0A1B0GW35 172 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 GSTTP1A0A1W2PQM5 241 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 A6NHS1 94 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 H0Y3Z8 333 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CLGNO14967 610 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 EDF1O60869 148 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ATP9AO75110 1047 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ENTPD5O75356 428 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ATP5HO75947 161 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PROSCO94903 275 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PSMC4P43686 418 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 QARSP47897 775 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 NPTX2P47972 431 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 IL9RQ01113 521 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 LMNB2Q03252 620 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TAF11Q15544 211 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 PARP6Q2NL67 630 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 FAM102BQ5T8I3 360 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 CAPRIN2Q6IMN6 1127 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ANO7Q6IWH7 933 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF365Q70YC5 407 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MON1BQ7L1V2 547 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ANKRD35Q8N283 1001 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ZCCHC9Q8N567 271 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 FBF1Q8TES7 1133 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MFSD14AQ96MC6 490 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ANKRD27Q96NW4 1050 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 LRRC37BQ96QE4 947 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 RAB3IPQ96QF0 476 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MIPEPQ99797 713 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 C11orf70Q9BRQ4 267 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 MAK16Q9BXY0 300 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 ST6GALNAC4Q9H4F1 302 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TRABDQ9H4I3 376 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 AGO4Q9HCK5 861 aaKnown RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 AVENQ9NQS1 362 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-212ENST00000552491 USTQ9Y2C2 406 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TMX2Q9Y320 296 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 TELO2Q9Y4R8 837 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 LRRC42Q9Y546 428 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 USH1CQ9Y6N9 552 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 THSD7AQ9UPZ6 1657 aa5.74□□□□□ -1.49
LIMA1-212ENST00000552491 DENND3A2RUS2 1198 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 LIN7AO14910 233 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 TYROBPO43914 113 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CYP1A1P04798 512 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 ABHD2P08910 425 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 PECAM1P16284 738 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CALB2P22676 271 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 GCKP35557 465 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 PEX19P40855 299 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 RAD23BP54727 409 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 SNRPFP62306 86 aaKnown RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CENPCQ03188 943 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 KCNC4Q03721 635 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CYP24A1Q07973 514 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 EFTUD2Q15029 972 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 MAPK6Q16659 721 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CTC1Q2NKJ3 1217 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 TKFCQ3LXA3 575 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 STRIP1Q5VSL9 837 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 KAZNQ674X7 775 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF772Q68DY9 489 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 TRIM68Q6AZZ1 485 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 TXNRD3NBQ6F5E7 133 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 RFWD3Q6PCD5 774 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 OTOAQ7RTW8 1153 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 PODNQ7Z5L7 613 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 LONP2Q86WA8 852 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 MAP4K3Q8IVH8 894 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 OGFOD1Q8N543 542 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF276Q8N554 614 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CCDC89Q8N998 374 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 BBOF1Q8ND07 529 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF483Q8TF39 744 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 SPIRE2Q8WWL2 714 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 KIFAP3Q92845 792 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 ACSF2Q96CM8 615 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 PRR11Q96HE9 360 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 FAM81BQ96LP2 452 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 FBXL18Q96ME1 805 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 LBHD1Q9BQE6 289 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 MRIQ9BWK5 157 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 DENND2DQ9H6A0 471 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-212ENST00000552491 CYLDQ9NQC7 956 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 TXLNGQ9NUQ3 528 aa5.73□□□□□ -1.49
LIMA1-212ENST00000552491 WBP1LQ9NX94 342 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms