RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FAM167AQ96KS9 214 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 MYD88Q99836 296 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 MLST8Q9BVC4 326 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 C11orf54Q9H0W9 315 aaPredicted RBP5.11□□□□□ -1.59
VPS29-205ENST00000548539 MYH16Q9H6N6 1097 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 SARS2Q9NP81 518 aaKnown RBP5.11□□□□□ -1.59
VPS29-205ENST00000548539 MOCS1Q9NZB8 636 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 SLC23A1Q9UHI7 598 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 TPCN1Q9ULQ1 816 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 USP19O94966 1318 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 ATRNL1Q5VV63 1379 aa5.11□□□□□ -1.59
VPS29-205ENST00000548539 TCRBV7S2A1N4TA0A589 114 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 INO80B-WBP1J3KQ70 363 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 KIAA0391O15091 583 aaKnown RBP5.1□□□□□ -1.59
VPS29-205ENST00000548539 GRM6O15303 877 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 ABHD16AO95870 558 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 BRAFP15056 766 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 NPR1P16066 1061 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 ITGB6P18564 788 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 PRDX5P30044 214 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 ALDH5A1P51649 535 aaPredicted RBP5.1□□□□□ -1.59
VPS29-205ENST00000548539 AK2P54819 239 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 RAP2BP61225 183 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 IFIT5Q13325 482 aaKnown RBP5.1□□□□□ -1.59
VPS29-205ENST00000548539 ANKS6Q68DC2 871 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 UBE3BQ7Z3V4 1068 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 C11orf96Q7Z7L8 435 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 XYLT1Q86Y38 959 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 PLXDC1Q8IUK5 500 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 FAM186BQ8IYM0 893 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 BRIX1Q8TDN6 353 aaKnown RBP5.1□□□□□ -1.59
VPS29-205ENST00000548539 GJA10Q969M2 543 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 MRI1Q9BV20 369 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 INO80BQ9C086 356 aaPredicted RBP5.1□□□□□ -1.59
VPS29-205ENST00000548539 LRRC27Q9C0I9 530 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 ENKD1Q9H0I2 346 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 NUP62CLQ9H1M0 184 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 KCNH6Q9H252 994 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 WDCPQ9H6R7 721 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 NLRC4Q9NPP4 1024 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 CNNM1Q9NRU3 951 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 FZD1Q9UP38 647 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 SNX13Q9Y5W8 968 aa5.1□□□□□ -1.59
VPS29-205ENST00000548539 LOC102724159A0A0B4J2E5 919 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 RHPN2P1A8MT19 583 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 CXorf49A8MYA2 514 aaPredicted RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 ATP5JP18859 108 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 HDCP19113 662 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 PRIM2P49643 509 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 FLT3LGP49771 235 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 EXOSC9Q06265 439 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 MRPL49Q13405 166 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 PWP2Q15269 919 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 FAM47AQ5JRC9 791 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 ZNF529Q6P280 563 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 KCNV1Q6PIU1 500 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 FAM111BQ6SJ93 734 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 OLFML1Q6UWY5 402 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 FAM90A1Q86YD7 464 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 PCSK9Q8NBP7 692 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 APIPQ96GX9 242 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 P2RX7Q99572 595 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 TCF25Q9BQ70 676 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 MRPL46Q9H2W6 279 aaKnown RBP5.09□□□□□ -1.59
VPS29-205ENST00000548539 TOR3AQ9H497 397 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 RSAD1Q9HA92 442 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 KIAA1586Q9HCI6 787 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 CPNE7Q9UBL6 633 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 OGDHLQ9ULD0 1010 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 DMTF1Q9Y222 760 aa5.09□□□□□ -1.59
VPS29-205ENST00000548539 GOLGA6L6A8MZA4 724 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 TBX3O15119 743 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 TEX33O43247 280 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 PPFIA4O75335 1185 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 ITGB1P05556 798 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 HTR3AP46098 478 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 PIK3CGP48736 1102 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 SUMO3P55854 103 aaPredicted RBP5.08□□□□□ -1.6
VPS29-205ENST00000548539 SOX8P57073 446 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 MORC3Q14149 939 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 ATP2B3Q16720 1220 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 CCDC93Q567U6 631 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 HECTD2Q5U5R9 776 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 LIX1LQ8IVB5 337 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 KRT78Q8N1N4 520 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 ANKS1AQ92625 1134 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 PHKBQ93100 1093 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 MRGPRX1Q96LB2 322 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 CCDC138Q96M89 665 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 RIPOR3Q96MK2 946 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 ZNF287Q9HBT7 754 aa5.08□□□□□ -1.6
VPS29-205ENST00000548539 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.08□□□□□ -1.6
VPS29-205ENST00000548539 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS29-205ENST00000548539 GRID2IPA4D2P6 1211 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 KIAA0355O15063 1070 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 HOXA3O43365 443 aaPredicted RBP5.07□□□□□ -1.6
VPS29-205ENST00000548539 FTH1P19P0C7X4 201 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 ZKSCAN1P17029 563 aaPredicted RBP5.07□□□□□ -1.6
VPS29-205ENST00000548539 SLC6A4P31645 630 aa5.07□□□□□ -1.6
VPS29-205ENST00000548539 TM4SF4P48230 202 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms