RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 KREMEN1Q96MU8 473 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 PI4K2AQ9BTU6 479 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 PLVAPQ9BX97 442 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 UBE2OQ9C0C9 1292 aaKnown RBP17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 ABHD10Q9NUJ1 306 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 KIAA1257Q9ULG3 409 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 BARX2Q9UMQ3 279 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 PCDHB8Q9UN66 801 aa17.14■□□□□ 0.33
PRPF40A-212ENST00000545856 NRP1O14786 923 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 EPHB6O15197 1021 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 TLL1O43897 1013 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 GFPT2O94808 682 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 KIF4AO95239 1232 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 PAEPP09466 180 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 FECHP22830 423 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 WARSP23381 471 aaKnown RBP17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 FXR1P51114 621 aaKnown RBP eCLIP17.13■□□□□ 0.335e-6■■■□□ 17
PRPF40A-212ENST00000545856 LRMPQ12912 555 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 SFMBT2Q5VUG0 894 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 DSTYKQ6XUX3 929 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 RRAGAQ7L523 313 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 METTL23Q86XA0 190 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 ZNF677Q86XU0 584 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 TC2NQ8N9U0 490 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 TATDN2Q93075 761 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 SENP8Q96LD8 212 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 NLRC4Q9NPP4 1024 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 CISHQ9NSE2 258 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 NXF1Q9UBU9 619 aaKnown RBP17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 PCDHB12Q9Y5F1 795 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 PCDHA11Q9Y5I1 949 aa17.13■□□□□ 0.33
PRPF40A-212ENST00000545856 A0A1W2PPC1 479 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 CYB561D2O14569 222 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 PPEF2O14830 753 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 CILPO75339 1184 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 TADA2AO75478 443 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 ACO1P21399 889 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 SLC11A1P49279 550 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 ZNF132P52740 706 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 BCAR1P56945 870 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 STILQ15468 1287 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 SPOPLQ6IQ16 392 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 KCNT2Q6UVM3 1135 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 FAM84AQ96KN4 292 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 DNAJB4Q9UDY4 337 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 VWA8A3KMH1 1905 aa17.12■□□□□ 0.33
PRPF40A-212ENST00000545856 LRRC53A6NM62 1247 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 GABRDO14764 452 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 EFEMP2O95967 443 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 RB1P06400 928 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 PCSK1P29120 753 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 GATMP50440 423 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 PLCB3Q01970 1234 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 RAB30Q15771 203 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 ARHGAP44Q17R89 818 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 SOWAHAQ2M3V2 549 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 PAN2Q504Q3 1202 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 HS1BP3Q53T59 392 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 PPP1R2P3Q6NXS1 205 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 CD300LGQ6UXG3 332 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 VPS36Q86VN1 386 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 ADGRF2Q8IZF7 708 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 SLC39A11Q8N1S5 342 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 SPC24Q8NBT2 197 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 C3orf58Q8NDZ4 430 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 TMEM169Q96HH4 297 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 IGSF21Q96ID5 467 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 TNIP3Q96KP6 325 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 MMS19Q96T76 1030 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 NT5C1AQ9BXI3 368 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 GPR88Q9GZN0 384 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 SPG21Q9NZD8 308 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 LZTS1Q9Y250 596 aa17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 MRPL42Q9Y6G3 142 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-212ENST00000545856 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 SSU72P8A0A1W2PR75 194 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 H0YGN5 161 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 SPTLC1O15269 473 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 B4GALT3O60512 393 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 LRRN2O75325 713 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 SERPING1P05155 500 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 PTMAP06454 111 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 CREMQ03060 361 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 UBE3AQ05086 875 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 PTK2Q05397 1052 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 ASIC2Q16515 512 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 TIGD5Q53EQ6 642 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 SPOUT1Q5T280 376 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 FUT10Q6P4F1 479 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 TMTC1Q8IUR5 882 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 RNF168Q8IYW5 571 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 COLGALT1Q8NBJ5 622 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 PAAF1Q9BRP4 392 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 MARCH5Q9NX47 278 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 L1RE1Q9UN81 338 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 SSX2IPQ9Y2D8 614 aa17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 PRG3Q9Y2Y8 225 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-212ENST00000545856 TNRC18O15417 2968 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms