RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 NME5P56597 212 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 RCN1Q15293 331 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 NOD2Q9HC29 1040 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 HNRNPRO43390 633 aaKnown RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 GOLPH3Q9H4A6 298 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 PIN4Q9Y237 131 aaKnown RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 SNX9Q9Y5X1 595 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 KIF21AQ7Z4S6 1674 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 ADGRL2O95490 1459 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 PRKCBP05771 671 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 VHLP40337 213 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 SERPINB9P50453 376 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 TMEM143Q96AN5 459 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 E2F7Q96AV8 911 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 PTPN7P35236 360 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 DALRD3Q5D0E6 543 aaKnown RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 CHSY1Q86X52 802 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 ZBTB10Q96DT7 871 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 DCP1AQ9NPI6 582 aaPredicted RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 PDE5AO76074 875 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 MZF1P28698 734 aaPredicted RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 NCALDP61601 193 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 ATP2C1P98194 919 aaPredicted RBP16.14■□□□□ 0.17
CHD4-210ENST00000544040 DNAJC3Q13217 504 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 TBC1D19Q8N5T2 526 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 SGSM3Q96HU1 749 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 FAM49BQ9NUQ9 324 aa16.14■□□□□ 0.17
CHD4-210ENST00000544040 BARGINQ6ZT62 677 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 DDHD1Q8NEL9 900 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 MRPS26Q9BYN8 205 aaKnown RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 KLHL25Q9H0H3 589 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 QTRT2Q9H974 415 aaKnown RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 VIPAS39Q9H9C1 493 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 DMAP1Q9NPF5 467 aaPredicted RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 SLC39A10Q9ULF5 831 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 KDM5DQ9BY66 1539 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 HEG1Q9ULI3 1381 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 MYBP10242 640 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 PTRHD1Q6GMV3 140 aaKnown RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 RPAP1Q9BWH6 1393 aaPredicted RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 PSD3Q9NYI0 1048 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 SLC30A1Q9Y6M5 507 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 CLASP2O75122 1294 aaKnown RBP16.13■□□□□ 0.17
CHD4-210ENST00000544040 TNIP3Q96KP6 325 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 RAD18Q9NS91 495 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 FHOD1Q9Y613 1164 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 STRNO43815 780 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 KRT16P08779 473 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 GPR141Q7Z602 305 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 FAM71DQ8N9W8 422 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 ZNF560Q96MR9 790 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 STK33Q9BYT3 514 aa16.13■□□□□ 0.17
CHD4-210ENST00000544040 ERVV-1B6SEH8 477 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 PGK2P07205 417 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 TFE3P19532 575 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 COMTP21964 271 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 FXR1P51114 621 aaKnown RBP eCLIP16.12■□□□□ 0.177e-7■■■■□ 19.6
CHD4-210ENST00000544040 ZRANB3Q5FWF4 1079 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.12■□□□□ 0.17
CHD4-210ENST00000544040 PRUNE1Q86TP1 453 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 KCNB2Q92953 911 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 CFAP65Q6ZU64 1925 aaKnown RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 RASSF9O75901 435 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 HPCAP84074 193 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 ALFQ53S48 1182 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 ECSITQ9BQ95 431 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 GTF2A1LQ9UNN4 478 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 PLEKHG1Q9ULL1 1385 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 FAM205CA6NFA0 338 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 SNRPAP09012 282 aaKnown RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 TWF1Q12792 350 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 VEPH1Q14D04 833 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 PTGISQ16647 500 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 UBA3Q8TBC4 463 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 HAO1Q9UJM8 370 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 SESN1Q9Y6P5 492 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 MAGI2Q86UL8 1455 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 ECE2O60344 883 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 MLNP12872 115 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 SPRP35270 261 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 SPATA18Q8TC71 538 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 TRIM62Q9BVG3 475 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 SKAP2O75563 359 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 PARNO95453 639 aaKnown RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 CHRM3P20309 590 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 MRPS35P82673 323 aaKnown RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 AASDHQ4L235 1098 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 EPC2Q52LR7 807 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 CYP4A22Q5TCH4 519 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 RASGRP2Q7LDG7 609 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 C10orf88Q9H8K7 445 aa16.12■□□□□ 0.17
CHD4-210ENST00000544040 PRG3Q9Y2Y8 225 aaPredicted RBP16.12■□□□□ 0.17
CHD4-210ENST00000544040 NPM3O75607 178 aaKnown RBP16.11■□□□□ 0.17
CHD4-210ENST00000544040 SPP2Q13103 211 aa16.11■□□□□ 0.17
CHD4-210ENST00000544040 LAMC2Q13753 1193 aa16.11■□□□□ 0.17
CHD4-210ENST00000544040 YAF2Q8IY57 180 aa16.11■□□□□ 0.17
CHD4-210ENST00000544040 RBBP8NLQ8NC74 664 aaPredicted RBP16.11■□□□□ 0.17
CHD4-210ENST00000544040 PIGBQ92521 554 aa16.11■□□□□ 0.17
CHD4-210ENST00000544040 THUMPD3Q9BV44 507 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms