RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LIMS2Q7Z4I7 341 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 GRASPQ7Z6J2 395 aaPredicted RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 FMR1NBQ8N0W7 255 aaPredicted RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 LRRC52Q8N7C0 313 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 ENGASEQ8NFI3 743 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 ASIC4Q96FT7 647 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 AVENQ9NQS1 362 aaPredicted RBP15.33■□□□□ 0.04
USP28-209ENST00000540925 INTS13Q9NVM9 706 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 DMAC2Q9NW81 257 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.33■□□□□ 0.04
USP28-209ENST00000540925 ITGA11Q9UKX5 1188 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 SORCS3Q9UPU3 1222 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 HCN4Q9Y3Q4 1203 aa15.33■□□□□ 0.04
USP28-209ENST00000540925 KPNA7A9QM74 516 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 CLIC2O15247 247 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 XYLBO75191 536 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 ITGB3P05106 788 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 ASGR2P07307 311 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 POLR2BP30876 1174 aaKnown RBP15.32■□□□□ 0.04
USP28-209ENST00000540925 PNPLA4P41247 253 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 NTHL1P78549 312 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 CYP24A1Q07973 514 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 SIGLEC14Q08ET2 396 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 SNW1Q13573 536 aaKnown RBP15.32■□□□□ 0.04
USP28-209ENST00000540925 HS2ST1Q7LGA3 356 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 BMP8AQ7Z5Y6 402 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 OR5B17Q8NGF7 314 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 OR10T2Q8NGX3 314 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 CACTINQ8WUQ7 758 aaKnown RBP15.32■□□□□ 0.04
USP28-209ENST00000540925 MFSD14AQ96MC6 490 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 ZNF560Q96MR9 790 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 MTMR12Q9C0I1 747 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 CRISPLD1Q9H336 500 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 PIDD1Q9HB75 910 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 EXOC1Q9NV70 894 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 HCFC1R1Q9NWW0 138 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 DNMT3BQ9UBC3 853 aaKnown RBP15.32■□□□□ 0.04
USP28-209ENST00000540925 DSEQ9UL01 958 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 INSL5Q9Y5Q6 135 aa15.32■□□□□ 0.04
USP28-209ENST00000540925 ANHXE9PGG2 379 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 CYB561D2O14569 222 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 OR4Q2P0C623 313 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 LAMP2P13473 410 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 FSHRP23945 695 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 ARPP19P56211 112 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 ADCY1Q08828 1119 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 PSMD6Q15008 389 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 SURF1Q15526 300 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 SV2CQ496J9 727 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 LMBRD2Q68DH5 695 aaPredicted RBP15.31■□□□□ 0.04
USP28-209ENST00000540925 HFE2Q6ZVN8 426 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 USP37Q86T82 979 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 WDR49Q8IV35 697 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 SLC9A9Q8IVB4 645 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 UBALD2Q8IYN6 164 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 XXYLT1Q8NBI6 393 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 GOLGA5Q8TBA6 731 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 TMEM209Q96SK2 561 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 ZCWPW1Q9H0M4 648 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 SMOC2Q9H3U7 446 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 KCNK12Q9HB15 430 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 CYP4F11Q9HBI6 524 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 GDAP2Q9NXN4 497 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 AGAP1Q9UPQ3 857 aa15.31■□□□□ 0.04
USP28-209ENST00000540925 ZFP37Q9Y6Q3 630 aaPredicted RBP15.31■□□□□ 0.04
USP28-209ENST00000540925 TMEM221A6NGB7 291 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 M0R296 226 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 PDXKO00764 312 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CPB1P15086 417 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CYP2J2P51589 502 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CLDN10P78369 228 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 MTMR3Q13615 1198 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 HTR4Q13639 388 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 KCNB1Q14721 858 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 SLC5A9Q2M3M2 681 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 ZNF318Q5VUA4 2279 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 WSCD1Q658N2 575 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CENPPQ6IPU0 288 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 POTEHQ6S545 545 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 GET4Q7L5D6 327 aaPredicted RBP15.3■□□□□ 0.04
USP28-209ENST00000540925 ITFG1Q8TB96 612 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 PLEKHO2Q8TD55 490 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CEP72Q9P209 647 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 IGSF9Q9P2J2 1179 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 HSFX1Q9UBD0 423 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CDH7Q9ULB5 785 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 CIZ1Q9ULV3 898 aaPredicted RBP15.3■□□□□ 0.04
USP28-209ENST00000540925 L1RE1Q9UN81 338 aa15.3■□□□□ 0.04
USP28-209ENST00000540925 MTMR11A4FU01 709 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 NRG2O14511 850 aaPredicted RBP15.29■□□□□ 0.04
USP28-209ENST00000540925 PRRG1O14668 218 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 RHOP08100 348 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 GBP2P32456 591 aaPredicted RBP15.29■□□□□ 0.04
USP28-209ENST00000540925 ELF1P32519 619 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 EPHA5P54756 1037 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 RBP5P82980 135 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 NFIL3Q16649 462 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 DUOXA2Q1HG44 320 aa15.29■□□□□ 0.04
USP28-209ENST00000540925 PABPC1LQ4VXU2 614 aaKnown RBP15.29■□□□□ 0.04
USP28-209ENST00000540925 PRSS36Q5K4E3 855 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms