RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 FLAD1Q8NFF5 587 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MRPS26Q9BYN8 205 aaKnown RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF287Q9HBT7 754 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 DNAJC17Q9NVM6 304 aaKnown RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 THAP1Q9NVV9 213 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 THEGQ9P2T0 379 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 MTRF1LQ9UGC7 380 aaKnown RBP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 POU2F3Q9UKI9 436 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 NIP7Q9Y221 180 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLIP1-214ENST00000540539 ECM29Q5VYK3 1845 aa9.97□□□□□ -0.81
CLIP1-214ENST00000540539 KCNJ13O60928 360 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 CHKAP35790 457 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 PLTPP55058 493 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 POU5F1Q01860 360 aaKnown RBP9.96□□□□□ -0.81
CLIP1-214ENST00000540539 DNAJC3Q13217 504 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 EXOC3L4Q17RC7 722 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 CCDC58Q4VC31 144 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 BTBD8Q5XKL5 378 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 LINC00469Q8N7U9 141 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 FBXO25Q8TCJ0 367 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 PHKBQ93100 1093 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 PTCD3Q96EY7 689 aaKnown RBP9.96□□□□□ -0.81
CLIP1-214ENST00000540539 OTUD5Q96G74 571 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 TMEM60Q9H2L4 133 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 SLCO1B3Q9NPD5 702 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 SACM1LQ9NTJ5 587 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 NDFIP2Q9NV92 336 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 ARL8BQ9NVJ2 186 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 GPRC5DQ9NZD1 345 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 DNAJB4Q9UDY4 337 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 PHTF1Q9UMS5 762 aa9.96□□□□□ -0.81
CLIP1-214ENST00000540539 DIS3Q9Y2L1 958 aaKnown RBP9.96□□□□□ -0.81
CLIP1-214ENST00000540539 ZSCAN5BA6NJL1 495 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 F8W8V4 182 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 BRAFP15056 766 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 IFNA8P32881 189 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 CLK3P49761 638 aaKnown RBP9.96□□□□□ -0.82
CLIP1-214ENST00000540539 SLC5A3P53794 718 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 AP2B1P63010 937 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 ADAM17P78536 824 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 KRT81Q14533 505 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 TNIP1Q15025 636 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 CYP2A13Q16696 494 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 LONRF1Q17RB8 773 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 SLC45A4Q5BKX6 768 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 NANOGP8Q6NSW7 305 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 ZDHHC24Q6UX98 284 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 MIER3Q7Z3K6 550 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 MTDHQ86UE4 582 aaKnown RBP9.96□□□□□ -0.82
CLIP1-214ENST00000540539 OXER1Q8TDS5 423 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 EEF2KMTQ96G04 330 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 PLEKHA8Q96JA3 519 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 FAR2Q96K12 515 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 PSKH2Q96QS6 385 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 RNF38Q9H0F5 515 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 GOLPH3Q9H4A6 298 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 RIC8AQ9NPQ8 531 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 MAGEC2Q9UBF1 373 aaPredicted RBP9.96□□□□□ -0.82
CLIP1-214ENST00000540539 RSL24D1Q9UHA3 163 aaKnown RBP9.96□□□□□ -0.82
CLIP1-214ENST00000540539 IFT52Q9Y366 437 aa9.96□□□□□ -0.82
CLIP1-214ENST00000540539 UTYO14607 1347 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PFASO15067 1338 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 A8MU76 341 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 UBE2Q2LH0YL09 131 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 HAT1O14929 419 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 RIPK2O43353 540 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ITM2AO43736 263 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ZWINTO95229 277 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 GYS1P13807 737 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ADCY8P40145 1251 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 THOP1P52888 689 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 STRN3Q13033 797 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 STK4Q13043 487 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 NCOA4Q13772 614 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PTPROQ16827 1216 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF658Q5TYW1 1059 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 DUPD1Q68J44 220 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 NLRX1Q86UT6 975 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 LRRC6Q86X45 466 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PLPP6Q8IY26 295 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ALLCQ8N6M5 410 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 SPATA5Q8NB90 893 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 SH3RF3Q8TEJ3 882 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PEX13Q92968 403 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 BORCS5Q969J3 196 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PAIP1Q9H074 479 aaKnown RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 TAS2R1Q9NYW7 299 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 PLK2Q9NYY3 685 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 QSER1Q2KHR3 1735 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 BTBD18B2RXH4 712 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 CD48P09326 243 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 ZBTB48P10074 688 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 IFITM2Q01629 132 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 GRIK5Q16478 980 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 TBC1D10BQ4KMP7 808 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-214ENST00000540539 TJAP1Q5JTD0 557 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 EGFLAMQ63HQ2 1017 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 LPCAT4Q643R3 524 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 RIPOR1Q6ZS17 1223 aa9.95□□□□□ -0.82
CLIP1-214ENST00000540539 MIGA1Q8NAN2 632 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms