RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FBXO9Q9UK97 447 aaPredicted RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 HDAC9Q9UKV0 1011 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 DTNAQ9Y4J8 743 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 V9GY48 417 aaPredicted RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 A0A0G2JND7 137 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 TTLL13PA6NNM8 815 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 H3BRJ5 948 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 H3BSA7 217 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 IL1BP01584 269 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 FUCA1P04066 466 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 CA4P22748 312 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 SERPINB6P35237 376 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 CSE1LP55060 971 aaKnown RBP13.07□□□□□ -0.32
USP3-203ENST00000538686 CASP7P55210 303 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 IFIT5Q13325 482 aaKnown RBP13.07□□□□□ -0.32
USP3-203ENST00000538686 PLEKHG4Q58EX7 1191 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 TTC27Q6P3X3 843 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 DCLRE1AQ6PJP8 1040 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 TPTE2Q6XPS3 522 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 ANKRD13DQ6ZTN6 518 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 SLC7A5P1Q8MH63 180 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 CCDC89Q8N998 374 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 MORC4Q8TE76 937 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 PTCD2Q8WV60 388 aaKnown RBP13.07□□□□□ -0.32
USP3-203ENST00000538686 PLEKHA8Q96JA3 519 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 SLC38A7Q9NVC3 462 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 TMOD2Q9NZR1 351 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 DCTN4Q9UJW0 460 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 CLEC11AQ9Y240 323 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 B3GNT3Q9Y2A9 372 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 MAD1L1Q9Y6D9 718 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 SPATA31A3Q5VYP0 1347 aa13.07□□□□□ -0.32
USP3-203ENST00000538686 PRDM1O75626 825 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 PCCAP05165 728 aaPredicted RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 ATP6V1B1P15313 513 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 PEX2P28328 305 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 PRDX6P30041 224 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 HNRNPFP52597 415 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 HADHBP55084 474 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 HIC1Q14526 733 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TLR1Q15399 786 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TRIP10Q15642 601 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 MAPK6Q16659 721 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TRIM71Q2Q1W2 868 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 ANKDD1AQ495B1 522 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 OGFRL1Q5TC84 451 aaPredicted RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 TRIM59Q8IWR1 403 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 SLC35G2Q8TBE7 412 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 OXNAD1Q96HP4 312 aaPredicted RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 CFAP57Q96MR6 1250 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 THTPAQ9BU02 230 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 VPS11Q9H270 941 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 EPS15L1Q9UBC2 864 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TAGLN3Q9UI15 199 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 ERVK-11Q9UQG0 969 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 KIF13AQ9H1H9 1805 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 DIP2CQ9Y2E4 1556 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 FCHO1O14526 889 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 XPOTO43592 962 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 EEF2P13639 858 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 PDE6AP16499 860 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 STT3AP46977 705 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 GALCP54803 685 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 RHBDL3P58872 404 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 NCOA4Q13772 614 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 SUZ12Q15022 739 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 TNIP1Q15025 636 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 LPCAT4Q643R3 524 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 C11orf63Q6NUN7 778 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TTC23LQ6PF05 361 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 RFX8Q6ZV50 586 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 FRA10AC1Q70Z53 315 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 SV2BQ7L1I2 683 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 CATIPQ7Z7H3 387 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 NLRX1Q86UT6 975 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 SPERTQ8NA61 448 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 RBM15BQ8NDT2 890 aaKnown RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 RFWD2Q8NHY2 731 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 PPP4R1Q8TF05 950 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 XAGE3Q8WTP9 111 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 GPR101Q96P66 508 aaPredicted RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 PHF12Q96QT6 1004 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 TMEM120AQ9BXJ8 343 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 IMPG2Q9BZV3 1241 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 ARHGEF4Q9NR80 690 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 C6orf203Q9P0P8 240 aaPredicted RBP13.06□□□□□ -0.32
USP3-203ENST00000538686 CDH7Q9ULB5 785 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 SUGT1Q9Y2Z0 365 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 PXDNQ92626 1479 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 FLT1P17948 1338 aa13.06□□□□□ -0.32
USP3-203ENST00000538686 ANKRD34BA5PLL1 514 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 TRIM64CA6NLI5 447 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 GOLGA8CPA6NN73 597 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 NOTOA8MTQ0 251 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 K7EPI3 171 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 TM9SF1O15321 606 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 AQP9O43315 295 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 SORBS3O60504 671 aa13.05□□□□□ -0.32
USP3-203ENST00000538686 FARP2O94887 1054 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms