RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MED16Q9Y2X0 877 aa4.8□□□□□ -1.64
CD44-233ENST00000531141 REXO2Q9Y3B8 237 aaKnown RBP4.8□□□□□ -1.64
CD44-233ENST00000531141 PAXBP1Q9Y5B6 917 aa4.8□□□□□ -1.64
CD44-233ENST00000531141 NOX1Q9Y5S8 564 aa4.8□□□□□ -1.64
CD44-233ENST00000531141 CCDC195A0A1B0GUA6 201 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 A0A1W2PS29 197 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 PRSS29PA6NIE9 313 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 NDUFA10O95299 355 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 NPR1P16066 1061 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 KCNA2P16389 499 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 RHCEP18577 417 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 KCNJ5P48544 419 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 RHDQ02161 417 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 GALEQ14376 348 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 POLD3Q15054 466 aaPredicted RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 CNN3Q15417 329 aaKnown RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 CRB2Q5IJ48 1285 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 B3GNTL1Q67FW5 361 aaPredicted RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 CYB5RLQ6IPT4 315 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 SWSAP1Q6NVH7 229 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 TAPT1Q6NXT6 567 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 CCDC149Q6ZUS6 474 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 CLNKQ7Z7G1 428 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 CFAP52Q8N1V2 620 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 TMEM132CQ8N3T6 1108 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 CELF5Q8N6W0 485 aaKnown RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 SLC17A8Q8NDX2 589 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 CPEB3Q8NE35 698 aaKnown RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 KBTBD7Q8WVZ9 684 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 RNF31Q96EP0 1072 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 SMOQ99835 787 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 ADAM2Q99965 735 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 ALOXE3Q9BYJ1 711 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 KRTAP9-8Q9BYQ0 159 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 C22orf23Q9BZE7 217 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 GALNT9Q9HCQ5 603 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 PCDHA6Q9UN73 950 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 MTO1Q9Y2Z2 717 aaKnown RBP4.79□□□□□ -1.64
CD44-233ENST00000531141 HS3ST4Q9Y661 456 aa4.79□□□□□ -1.64
CD44-233ENST00000531141 AATKQ6ZMQ8 1374 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 CCDC78A2IDD5 438 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 E7ENX8 843 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 M0QYG6 137 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 POLRMTO00411 1230 aaKnown RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 GOLIM4O00461 696 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PRC1O43663 620 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 ABHD16AO95870 558 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 FOSP01100 380 aaPredicted RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 ADH4P08319 380 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PIM1P11309 404 aaPredicted RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 C6P13671 934 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 EN2P19622 333 aaPredicted RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 MCM7P33993 719 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 GNALP38405 381 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PHKA1P46020 1223 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 TBX4P57082 545 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 GUCY1B3Q02153 619 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 TAP2Q03519 686 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 ABHD18Q0P651 414 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 LY6G5CQ5SRR4 150 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 FNDC7Q5VTL7 733 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 CCSAPQ6IQ19 270 aaPredicted RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 DARS2Q6PI48 645 aaKnown RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 APOA5Q6Q788 366 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PPP1R32Q7Z5V6 425 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 ARHGEF19Q8IW93 802 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 FAM156AQ8NDB6 213 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 IL31RAQ8NI17 732 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 LRTOMTQ8WZ04 291 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 FUBP1Q96AE4 644 aaKnown RBP4.78□□□□□ -1.64
CD44-233ENST00000531141 TIFAQ96CG3 184 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 BOD1Q96IK1 185 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 NT5C1BQ96P26 610 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 TRIM54Q9BYV2 358 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 ATP6V0A4Q9HBG4 840 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 SLC2A4RGQ9NR83 387 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 TMEM74BQ9NUR3 256 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 ETAA1Q9NY74 926 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 CTTNBP2NLQ9P2B4 639 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 DKK2Q9UBU2 259 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PLEKHM1Q9Y4G2 1056 aa4.78□□□□□ -1.64
CD44-233ENST00000531141 PRAMEF33A0A0G2JMD5 474 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 CENPVL1A0A0U1RR11 272 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 MYADML2A6NDP7 307 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 NPIPB8E9PQR5 432 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 MGEA5O60502 916 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 PRAMEF10O60809 474 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 SOAT2O75908 522 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 DNAJB5O75953 348 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 HDCP19113 662 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 PEX2P28328 305 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 ANXA11P50995 505 aaKnown RBP4.77□□□□□ -1.65
CD44-233ENST00000531141 VAV2P52735 878 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 ARFIP2P53365 341 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 BLOC1S1P78537 153 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 PURAQ00577 322 aaKnown RBP4.77□□□□□ -1.65
CD44-233ENST00000531141 RESTQ13127 1097 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 LLGL1Q15334 1064 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 GEN1Q17RS7 908 aa4.77□□□□□ -1.65
CD44-233ENST00000531141 KIAA0753Q2KHM9 967 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms