RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CXCL9Q07325 125 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 STRN3Q13033 797 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 EMC2Q15006 297 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 FEZF2Q8TBJ5 459 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 RMDN2Q96LZ7 410 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 NKIRAS1Q9NYS0 192 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 DNPEPQ9ULA0 475 aa20.39■□□□□ 0.86
VPS28-213ENST00000530983 RASA4BC9J798 803 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 RASA4O43374 803 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 ECM2O94769 699 aaPredicted RBP20.39■□□□□ 0.85
VPS28-213ENST00000530983 GCAP28676 217 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 ABCD1P33897 745 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 COPS2P61201 443 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 MGAT5Q09328 741 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 TMEM143Q96AN5 459 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 PARVAQ9NVD7 372 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 PNMA3Q9UL41 463 aa20.39■□□□□ 0.85
VPS28-213ENST00000530983 CCDC189A1A4V9 331 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 EGFRP00533 1210 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 POTEJP0CG39 1038 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 TAC1P20366 129 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 FOXN2P32314 431 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 NOP14P78316 857 aaKnown RBP20.38■□□□□ 0.85
VPS28-213ENST00000530983 TMED2Q15363 201 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 SCARA3Q6AZY7 606 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 NIM1KQ8IY84 436 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 REPS2Q8NFH8 660 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 ASAP3Q8TDY4 903 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 NSUN6Q8TEA1 469 aaKnown RBP20.38■□□□□ 0.85
VPS28-213ENST00000530983 TBC1D31Q96DN5 1066 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 SLITRK1Q96PX8 696 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 PLCD4Q9BRC7 762 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 FOXP3Q9BZS1 431 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 RXFP1Q9HBX9 757 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 CLGNO14967 610 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 MYCNP04198 464 aaPredicted RBP20.38■□□□□ 0.85
VPS28-213ENST00000530983 ZSCAN5DPP0CG00 497 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 WDR4P57081 412 aaKnown RBP20.38■□□□□ 0.85
VPS28-213ENST00000530983 ZNF252P-AS1Q0IIN9 211 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 CRYMQ14894 314 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 MTFR1Q15390 333 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 XKR3Q5GH77 459 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 KAZNQ674X7 775 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 SNRNP48Q6IEG0 339 aaKnown RBP20.38■□□□□ 0.85
VPS28-213ENST00000530983 PPP1R21Q6ZMI0 780 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 OR5B17Q8NGF7 314 aa20.38■□□□□ 0.85
VPS28-213ENST00000530983 IGF2BP3O00425 579 aaKnown RBP eCLIP20.37■□□□□ 0.85
VPS28-213ENST00000530983 DNALI1O14645 258 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 POLGP54098 1239 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 CLNS1AP54105 237 aaKnown RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 LMNB2Q03252 620 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 ANKRD35Q8N283 1001 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 RIBC1Q8N443 379 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 FAXDC2Q96IV6 333 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 SAYSD1Q9NPB0 183 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 IP6K2Q9UHH9 426 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 FAM47DPA6NHR8 397 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 PIGRP01833 764 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 EDN1P05305 212 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 ATP4AP20648 1035 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 MMP8P22894 467 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 GLRA2P23416 452 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 PAX7P23759 505 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 TBXAS1P24557 533 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 ALDH5A1P51649 535 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 ACCSLQ4AC99 568 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 MFSD7Q6UXD7 560 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 TRABD2AQ86V40 505 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 RCOR2Q8IZ40 523 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 ANKLE1Q8NAG6 615 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 ZNF526Q8TF50 670 aaPredicted RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 CGRRF1Q99675 332 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 ANKFY1Q9P2R3 1169 aa20.37■□□□□ 0.85
VPS28-213ENST00000530983 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.37■□□□□ 0.85
VPS28-213ENST00000530983 CNTNAP2Q9UHC6 1331 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 EXOC1LA0A1B0GW35 172 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 TMEM191CA6NGB0 347 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 RPSAP08865 295 aaKnown RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 TMEM191BP0C7N4 346 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ETS1P14921 441 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ATF7P17544 494 aaPredicted RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 FASTKD3Q14CZ7 662 aaKnown RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 DRICH1Q6PGQ1 229 aaPredicted RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 KIRREL3Q8IZU9 778 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ZNF606Q8WXB4 792 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 KCNN1Q92952 543 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 RBM41Q96IZ5 413 aaKnown RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 CFAP57Q96MR6 1250 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 MSTO1Q9BUK6 570 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 TARS2Q9BW92 718 aaKnown RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 GINM1Q9NU53 330 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 IVNS1ABPQ9Y6Y0 642 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 PHIPQ8WWQ0 1821 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 SUPT20HL2P0C7V6 817 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ALADP13716 330 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 ZNF132P52740 706 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 SUPT20HL1Q3ZLR7 823 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 EAPPQ56P03 285 aaPredicted RBP20.36■□□□□ 0.85
VPS28-213ENST00000530983 RNF43Q68DV7 783 aa20.36■□□□□ 0.85
VPS28-213ENST00000530983 CEP128Q6ZU80 1094 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms