RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 C11orf70Q9BRQ4 267 aa15.7■□□□□ 0.1
ECHDC1-220ENST00000528402 PSD3Q9NYI0 1048 aa15.7■□□□□ 0.1
ECHDC1-220ENST00000528402 WDR35Q9P2L0 1181 aa15.7■□□□□ 0.1
ECHDC1-220ENST00000528402 PARP2Q9UGN5 583 aa15.7■□□□□ 0.1
ECHDC1-220ENST00000528402 CITO14578 2027 aa15.7■□□□□ 0.1
ECHDC1-220ENST00000528402 GOLGA8KD6RF30 607 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 HAS3O00219 553 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 TLR3O15455 904 aaKnown RBP15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SMIM10L2AP0DMW4 78 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SMIM10L2BP0DMW5 78 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 PYGMP11217 842 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 HSPA9P38646 679 aaKnown RBP15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SREBF2Q12772 1141 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 MTMR3Q13615 1198 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 WDR72Q3MJ13 1102 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 LRRC38Q5VT99 294 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 JADE1Q6IE81 842 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SLC27A1Q6PCB7 646 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 TLK2Q86UE8 772 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 ERICH1Q86X53 443 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 IFNL1Q8IU54 200 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 CEP120Q8N960 986 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 C1orf131Q8NDD1 294 aaKnown RBP15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 EXOC4Q96A65 974 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 ZNF668Q96K58 619 aaPredicted RBP15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 APBA2Q99767 749 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 ERP44Q9BS26 406 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 MIS12Q9H081 205 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SETD4Q9NVD3 440 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 AMACRQ9UHK6 382 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 SIX4Q9UIU6 781 aa15.69■□□□□ 0.1
ECHDC1-220ENST00000528402 H3BQF6 201 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 IGF2BP3O00425 579 aaKnown RBP eCLIP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 POLR3GO15318 223 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 NFICP08651 508 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CYP2C9P11712 490 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CD58P19256 250 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 PSEN2P49810 448 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 YARSP54577 528 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 GSCP56915 257 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MYO1EQ12965 1108 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 ZNF211Q13398 564 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 PIGHQ14442 188 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 HLTFQ14527 1009 aaKnown RBP eCLIP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MFSD10Q14728 455 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 STILQ15468 1287 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 NOTUMQ6P988 496 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MMS22LQ6ZRQ5 1243 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 SYDE1Q6ZW31 735 aaPredicted RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 ILDR2Q71H61 639 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 GSPT2Q8IYD1 628 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 SLCO2A1Q92959 643 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MAGOHBQ96A72 148 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 ZBTB10Q96DT7 871 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CPB2Q96IY4 423 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 DNAI2Q9GZS0 605 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 LRRC19Q9H756 370 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MGAMO43451 1857 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 GPR32O75388 356 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CAPN15O75808 1086 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 SYF2O95926 243 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 IGHA2P01877 340 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 ITGB3P05106 788 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 SLC10A3P09131 477 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 WEE2P0C1S8 567 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 VDRP11473 427 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 DARSP14868 501 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 ADAM17P78536 824 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 MRPS25P82663 173 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CFAP58Q5T655 872 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 LRIG3Q6UXM1 1119 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CATSPER4Q7RTX7 472 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 TMEM192Q8IY95 271 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 KATNAL2Q8IYT4 538 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 IQCKQ8N0W5 287 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 PRELID2Q8N945 189 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 EXD1Q8NHP7 514 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 CXorf38Q8TB03 319 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 KAT2BQ92831 832 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 HPDLQ96IR7 371 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 BTBD6Q96KE9 485 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 DPP3Q9NY33 737 aa15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 NXF1Q9UBU9 619 aaKnown RBP15.68■□□□□ 0.1
ECHDC1-220ENST00000528402 DOCK3Q8IZD9 2030 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 TMEM191CA6NGB0 347 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 A6NNZ2 444 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 TTI1O43156 1089 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 XPOTO43592 962 aaKnown RBP15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 CALCAP01258 141 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 HMGCRP04035 888 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 RPLP2P05387 115 aaKnown RBP15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 BRD2P25440 801 aaKnown RBP15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 GGCXP38435 758 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 COPS2P61201 443 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 ZNF268Q14587 947 aaPredicted RBP15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 CNGA2Q16280 664 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 TUBB8Q3ZCM7 444 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 DUPD1Q68J44 220 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 DNAJC24Q6P3W2 148 aa15.67■□□□□ 0.1
ECHDC1-220ENST00000528402 SAPCD2Q86UD0 394 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms