RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 SLC2A4RGQ9NR83 387 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 EXOC7Q9UPT5 735 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 SLC27A5Q9Y2P5 690 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 ZDHHC9Q9Y397 364 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 YIPF1Q9Y548 306 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 PCDHB13Q9Y5F0 798 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 COL4A3Q01955 1670 aa11.3□□□□□ -0.6
PRPF40B-204ENST00000527253 ZFHX2Q9C0A1 2572 aaPredicted RBP11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 OR6C75A6NL08 312 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 SOAT2O75908 522 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 IL18RAPO95256 599 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 CYP11A1P05108 521 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 GJA1P17302 382 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 AOC1P19801 751 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 GARTP22102 1010 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 FCARP24071 287 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 MRE11P49959 708 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 DNM1Q05193 864 aaKnown RBP11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 DUSP4Q13115 394 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 TANGO2Q6ICL3 276 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 CENPPQ6IPU0 288 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 CNNM4Q6P4Q7 775 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 EPM2AIP1Q7L775 607 aaPredicted RBP11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 USP37Q86T82 979 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 LRRTM3Q86VH5 581 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 BRSK2Q8IWQ3 736 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 CCDC65Q8IXS2 484 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 SYCP3Q8IZU3 236 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 TTC9BQ8N6N2 239 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 ATAD1Q8NBU5 361 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 ZSWIM3Q96MP5 696 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 C7orf25Q9BPX7 421 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 TBC1D17Q9HA65 648 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 RCOR1Q9UKL0 485 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 MAFFQ9ULX9 164 aa11.29□□□□□ -0.6
PRPF40B-204ENST00000527253 TSC2P49815 1807 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 MTMR11A4FU01 709 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 CYB561D2O14569 222 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 POLR2DO15514 142 aaKnown RBP11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 EXTL3O43909 919 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 ODC1P11926 461 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 TAF6P49848 677 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 NUBP1P53384 320 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 EPHA5P54756 1037 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 EHHADHQ08426 723 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 ALCAMQ13740 583 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 MYBPC2Q14324 1141 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 FAM78AQ5JUQ0 283 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 RESP18Q5W5W9 173 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 WSCD1Q658N2 575 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 MTSS1LQ765P7 747 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 TMC8Q8IU68 726 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 C1orf127Q8N9H9 656 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 IQUBQ8NA54 791 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 ZNF512Q96ME7 567 aaPredicted RBP11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 PYM1Q9BRP8 204 aaKnown RBP11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 OXCT2Q9BYC2 517 aaPredicted RBP11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 ZCWPW1Q9H0M4 648 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 BLZF1Q9H2G9 400 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 CUEDC2Q9H467 287 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 PDE11AQ9HCR9 933 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 ARHGEF3Q9NR81 526 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 GDE1Q9NZC3 331 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 PTPRJQ12913 1337 aa11.28□□□□□ -0.6
PRPF40B-204ENST00000527253 SHISA7A6NL88 538 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 TGFB1I1O43294 461 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 LRRN2O75325 713 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ECI2O75521 394 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 MICAL2O94851 1124 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 HSP90AA1P07900 732 aaKnown RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 MYL4P12829 197 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 PDIA4P13667 645 aaKnown RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 PAX3P23760 479 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 POLR2BP30876 1174 aaKnown RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ME1P48163 572 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ASIC1P78348 528 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 TFAMQ00059 246 aaKnown RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 SNW1Q13573 536 aaKnown RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 LMBRD2Q68DH5 695 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 PDZD4Q76G19 769 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 NT5DC4Q86YG4 428 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 CBWD2Q8IUF1 395 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 CCDC105Q8IYK2 499 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 GRAMD1CQ8IYS0 662 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 DTWD2Q8NBA8 298 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 OR5B17Q8NGF7 314 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 SHKBP1Q8TBC3 707 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ZNF507Q8TCN5 953 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 KCNG4Q8TDN1 519 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ATOH1Q92858 354 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 FOXQ1Q9C009 403 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 LRRC27Q9C0I9 530 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 TMEM206Q9H813 350 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 ZNF334Q9HCZ1 680 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 TMLHEQ9NVH6 421 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 RBAKQ9NYW8 714 aaPredicted RBP11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 DLGAP2Q9P1A6 1054 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 SIX4Q9UIU6 781 aa11.27□□□□□ -0.61
PRPF40B-204ENST00000527253 AGAP1Q9UPQ3 857 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms