RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, human

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13B-208	ENST00000521037	TMEM179	Q6ZVK1	233 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	KCNG4	Q8TDN1	519 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	P2RX5	Q93086	422 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	DDX11	Q96FC9	970 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	AP5M1	Q9H0R1	490 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	EPC1	Q9H2F5	836 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLK	Q9H2G2	1235 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	RAI14	Q9P0K7	980 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	SUSD2	Q9UGT4	822 aa		4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	TEP1	Q99973	2627 aa	Known RBP	4.57	□□□□□ -1.68
VPS13B-208	ENST00000521037	ADGRA3	Q8IWK6	1321 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	IGKV6D-41	A0A0C4DH26	115 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	PPP1R12A	O14974	1030 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	SRGAP3	O43295	1099 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	GREM1	O60565	184 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	N4BP1	O75113	896 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	DGKI	O75912	1065 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CSPG5	O95196	566 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	PARN	O95453	639 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	AMH	P03971	560 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	HLA-DOA	P06340	250 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	MYL3	P08590	195 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	DBH	P09172	617 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	PFKL	P17858	780 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CCNF	P41002	786 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	EXOSC9	Q06265	439 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	FAM47C	Q5HY64	1035 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLC4A10	Q6U841	1118 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	UNQ6494/PRO21346	Q6UXR6	183 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	RBM23	Q86U06	439 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	SERINC5	Q86VE9	423 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	LSR	Q86X29	649 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	MIGA1	Q8NAN2	632 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CHST13	Q8NET6	341 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	POF1B	Q8WVV4	589 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	HNRNPLL	Q8WVV9	542 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	APPBP2	Q92624	585 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	YME1L1	Q96TA2	773 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	APOL5	Q9BWW9	433 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	LRRC3	Q9BY71	257 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	WDR11	Q9BZH6	1224 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CCDC113	Q9H0I3	377 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	EHMT1	Q9H9B1	1298 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	VTA1	Q9NP79	307 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	RXFP3	Q9NSD7	469 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	AP5S1	Q9NUS5	200 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	TYW1	Q9NV66	732 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CYP39A1	Q9NYL5	469 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	GMIP	Q9P107	970 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	HDAC6	Q9UBN7	1215 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	R3HCC1	Q9Y3T6	440 aa	Known RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	MRVI1	Q9Y6F6	885 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	UBR5	O95071	2799 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	CACNA1I	Q9P0X4	2223 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	PATJ	Q8NI35	1801 aa		4.56	□□□□□ -1.68
VPS13B-208	ENST00000521037	PIEZO2	Q9H5I5	2752 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	MYO18B	Q8IUG5	2567 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	CYP2D7	A0A087X1C5	515 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	FAM221B	A6H8Z2	402 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	HIDE1	A8MVS5	230 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	BAG3	O95817	575 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	NDUFB10	O96000	172 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	DCN	P07585	359 aa	Known RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ENDOU	P21128	410 aa	Known RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ICA1	Q05084	483 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ARHGAP1	Q07960	439 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	TARBP2	Q15633	366 aa	Known RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ZNF528	Q3MIS6	628 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	FBXL19	Q6PCT2	694 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	PAQR3	Q6TCH7	311 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	C1orf210	Q8IVY1	113 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ANKRD35	Q8N283	1001 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	FIBCD1	Q8N539	461 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	GOLM1	Q8NBJ4	401 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLC16A11	Q8NCK7	471 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	IL17RA	Q96F46	866 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	SHD	Q96IW2	340 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	HNRNPAB	Q99729	332 aa	Known RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	SLF1	Q9BQI6	1058 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	RTP3	Q9BQQ7	232 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	SRRT	Q9BXP5	876 aa	Known RBP	4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	ANTXR1	Q9H6X2	564 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	CABP5	Q9NP86	173 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	FANCL	Q9NW38	375 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	PRR13	Q9NZ81	148 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	DUSP12	Q9UNI6	340 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	FBN2	P35556	2912 aa		4.55	□□□□□ -1.68
VPS13B-208	ENST00000521037	TCRBV5S4A2T	A0A5A2	114 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	ASB14	A6NK59	587 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	MINDY4B	A8MYZ0	360 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037		F5H6K3	240 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	F2	P00734	622 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	CYBB	P04839	570 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	MMP3	P08254	477 aa		4.54	□□□□□ -1.68
VPS13B-208	ENST00000521037	WEE2	P0C1S8	567 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms