RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 CLTAP09496 248 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ATICP31939 592 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 DMP1Q13316 513 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZNF211Q13398 564 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 MBTPS1Q14703 1052 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZBTB6Q15916 424 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 UGCGQ16739 394 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 RRAGBQ5VZM2 374 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 RUFY4Q6ZNE9 571 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 NYAP1Q6ZVC0 841 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 TAS1R3Q7RTX0 852 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 USP37Q86T82 979 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 CMTR1Q8N1G2 835 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 GUF1Q8N442 669 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 TMEM161BQ8NDZ6 487 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 NXPE3Q969Y0 559 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 MSANTD3Q96H12 275 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 CEP63Q96MT8 703 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PURBQ96QR8 312 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 ACO2Q99798 780 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 BPIFA3Q9BQP9 254 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 C11orf84Q9BUA3 381 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 CERS4Q9HA82 394 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PARVGQ9HBI0 331 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 LRRC4CQ9HCJ2 640 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 METTL5Q9NRN9 209 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 DSEQ9UL01 958 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PHTF1Q9UMS5 762 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 RAXQ9Y2V3 346 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZDHHC9Q9Y397 364 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 HEMK1Q9Y5R4 338 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 MTCL1Q9Y4B5 1905 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 BAZ2BQ9UIF8 2168 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 C3orf80F5H4A9 247 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ADAMTS3O15072 1205 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ACTN4O43707 911 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 TSPAN1O60635 241 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 PEX10O60683 326 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZC3H11AO75152 810 aaKnown RBP eCLIP3.09□□□□□ -1.91
MCF2-208ENST00000519895 FGFR1OPO95684 399 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 MBD3O95983 291 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 SRGAP2BP0DMP2 458 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZSCAN20P17040 1043 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 UBE2HP62256 183 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 LRRC63Q05C16 580 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 CAPSQ13938 189 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 STK38Q15208 465 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 MAPK6Q16659 721 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 SWI5Q1ZZU3 235 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 UVSSAQ2YD98 709 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 XKR9Q5GH70 373 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 NCAPH2Q6IBW4 605 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 MPZL3Q6UWV2 235 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 TREML4Q6UXN2 200 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 TMEM92Q6UXU6 159 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 ZNF720Q7Z2F6 126 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 LRRC52Q8N7C0 313 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 FLCNQ8NFG4 579 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 BEST2Q8NFU1 509 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 URGCPQ8TCY9 931 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 SNRNP27Q8WVK2 155 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 MRPS27Q92552 414 aaKnown RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 DHTKD1Q96HY7 919 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 CDK5RAP3Q96JB5 506 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 CASD1Q96PB1 797 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 UBXN6Q9BZV1 441 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 TRPV6Q9H1D0 765 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 SETD4Q9NVD3 440 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 MAGEC2Q9UBF1 373 aaPredicted RBP3.09□□□□□ -1.91
MCF2-208ENST00000519895 NOD1Q9Y239 953 aa3.09□□□□□ -1.91
MCF2-208ENST00000519895 NCANO14594 1321 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 ATP8B3O60423 1300 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 TRIP12Q14669 1992 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 A0A0B4J269 797 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 CXorf51AA0A1B0GTR3 108 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 GTPBP10A4D1E9 387 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 IKBKBO14920 756 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 TPD52L2O43399 206 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 LAMTOR5O43504 91 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 FAM189A1O60320 539 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 EPN2O95208 641 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 SMC2O95347 1197 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 RPN1P04843 607 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 ZNF286BP0CG31 522 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 HOXB8P17481 243 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 HOXA11P31270 313 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 MCM7P33993 719 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 BMPR1AP36894 532 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 ANP32AP39687 249 aaKnown RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 TXKP42681 527 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 FAM160A1Q05DH4 1040 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 MTA1Q13330 715 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 KCNC3Q14003 757 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 ZNF174Q15697 407 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 SKOR2Q2VWA4 1001 aaPredicted RBP3.09□□□□□ -1.92
MCF2-208ENST00000519895 HIST2H2BCQ6DN03 193 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 HIST2H2BDQ6DRA6 164 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 DCLRE1AQ6PJP8 1040 aa3.09□□□□□ -1.92
MCF2-208ENST00000519895 SKAP1Q86WV1 359 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms