RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ALDH18A1P54886 795 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RPS6P62753 249 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 PRKCEQ02156 737 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 BMT2Q1RMZ1 405 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CIAPIN1Q6FI81 312 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 APOBEC3HQ6NTF7 200 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TTLL6Q8N841 843 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 GSDMBQ8TAX9 411 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 EPS8L1Q8TE68 723 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 NLRP7Q8WX94 980 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CCT6BQ92526 530 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 VPS11Q9H270 941 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ATF5Q9Y2D1 282 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 C15orf41Q9Y2V0 281 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 IVNS1ABPQ9Y6Y0 642 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CASZ1Q86V15 1759 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 B2RBV5 119 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 F5H423 210 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 KIF3CO14782 793 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RBP3P10745 1247 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 OSBPP22059 807 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CTCFP49711 727 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RRP1BQ14684 758 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 EMC2Q15006 297 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 WDR72Q3MJ13 1102 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 C15orf52Q6ZUT6 534 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CEP120Q8N960 986 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 EXD1Q8NHP7 514 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 PRMT6Q96LA8 375 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TARS2Q9BW92 718 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 IKZF4Q9H2S9 585 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP4F11Q9HBI6 524 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ERVK-5Q9HDB9 667 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 KCNN4O15554 427 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 TRPA1O75762 1119 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP3A4P08684 503 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 BRD2P25440 801 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CHRNA5P30532 468 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 RARRES1P49788 294 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MRPS35P82673 323 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP24A1Q07973 514 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DDR1Q08345 913 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 KCTD2Q14681 263 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 PCNX4Q63HM2 1172 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC26A7Q8TE54 656 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DDX27Q96GQ7 796 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM167AQ96KS9 214 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SERPINI1Q99574 410 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 C17orf75Q9HAS0 396 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 HEY2Q9UBP5 337 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ZC3H7BQ9UGR2 993 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ROBO3Q96MS0 1386 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DISP2A7MBM2 1401 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ZC3H11AO75152 810 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 GMNNO75496 209 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ICAM1P05362 532 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 APRTP07741 180 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 WEE2P0C1S8 567 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MAPTP10636 758 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MMP13P45452 471 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CYP4A22Q5TCH4 519 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM71DQ8N9W8 422 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SPATA18Q8TC71 538 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 LPAR1Q92633 364 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 PRCCQ92733 491 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 GJD4Q96KN9 370 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 LRGUKQ96M69 825 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 FGD4Q96M96 766 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF277Q9NRM2 450 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DONSONQ9NYP3 566 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DDX3YO15523 660 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 FDX1P10109 184 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CPA2P48052 419 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MTMR2Q13614 643 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SMAD1Q15797 465 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SGSM1Q2NKQ1 1148 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 TAF1BQ53T94 588 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MTDHQ86UE4 582 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 PIP4K2CQ8TBX8 421 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 NAF1Q96HR8 494 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM96AQ9H5X1 160 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 TMX2Q9Y320 296 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ART3Q13508 389 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SLC35G1Q2M3R5 365 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SPOPLQ6IQ16 392 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 BZW1Q7L1Q6 419 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CKAP2Q8WWK9 683 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ART4Q93070 314 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 MKL1Q969V6 931 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 CCDC124Q96CT7 223 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SH3GL3Q99963 347 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 THTPAQ9BU02 230 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 TMEM39BQ9GZU3 492 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 SNX25Q9H3E2 840 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 ACAD9Q9H845 621 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 DLGAP2Q9P1A6 1054 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 EPS15L1Q9UBC2 864 aa8.84□□□□□ -0.99
LIMCH1-216ENST00000512820 PIK3CDO00329 1044 aa8.83□□□□□ -1
LIMCH1-216ENST00000512820 VIL1P09327 827 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms