RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 RABGGTAQ92696 567 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 DDX27Q96GQ7 796 aaKnown RBP10.82□□□□□ -0.68
NUP54-203ENST00000504173 BORCS6Q96GS4 357 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 FAM84AQ96KN4 292 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 BPIFA3Q9BQP9 254 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 PAAF1Q9BRP4 392 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 COLEC11Q9BWP8 271 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 PHF7Q9BWX1 381 aaPredicted RBP10.82□□□□□ -0.68
NUP54-203ENST00000504173 PLVAPQ9BX97 442 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 LMAN2LQ9H0V9 348 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 TSPY26PQ9H489 355 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 MMRN2Q9H8L6 949 aa10.82□□□□□ -0.68
NUP54-203ENST00000504173 R3HCC1Q9Y3T6 440 aaKnown RBP10.82□□□□□ -0.68
NUP54-203ENST00000504173 NLRC5Q86WI3 1866 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 SMTNL1A8MU46 457 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 IKBKBO14920 756 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 STX10O60499 249 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 B3GAT3O94766 335 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 KIF4AO95239 1232 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 CAVIN2O95810 425 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 ITGB3P05106 788 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 KRT19P08727 400 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 POLR2BP30876 1174 aaKnown RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 MTIF2P46199 727 aaKnown RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 ZNF445P59923 1031 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 ADAM15Q13444 863 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 BIRC3Q13489 604 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 UPP1Q16831 310 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 HSP90AA4PQ58FG1 418 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 C9orf57Q5W0N0 161 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 ASTLQ6HA08 431 aaPredicted RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 TRAPPC11Q7Z392 1133 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 IRF2BP1Q8IU81 584 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 SLC39A11Q8N1S5 342 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 C1orf127Q8N9H9 656 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 KLHL23Q8NBE8 558 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 TMEM169Q96HH4 297 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 IGSF21Q96ID5 467 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 C11orf84Q9BUA3 381 aaPredicted RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 SAMSN1Q9NSI8 373 aaKnown RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 MARCH5Q9NX47 278 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 SPG21Q9NZD8 308 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 RALYQ9UKM9 306 aaKnown RBP10.81□□□□□ -0.68
NUP54-203ENST00000504173 ITGA11Q9UKX5 1188 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 PCDHGC5Q9Y5F6 944 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 MAST4O15021 2626 aa10.81□□□□□ -0.68
NUP54-203ENST00000504173 KCNJ18B7U540 433 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 C5orf67F2Z3F1 127 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 F8W810 466 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 PPEF2O14830 753 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 PHACTR2O75167 634 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 TADA2AO75478 443 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 FGF18O76093 207 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 CLSTN1O94985 981 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 RB1P06400 928 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 GCLMP48507 274 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 MXI1P50539 228 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 MARSP56192 900 aaKnown RBP10.8□□□□□ -0.68
NUP54-203ENST00000504173 CLDN10P78369 228 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 RBP5P82980 135 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 KRT17Q04695 432 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 PPP3CAQ08209 521 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 TRPC3Q13507 836 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 KCNJ12Q14500 433 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 C1orf220Q5T0J3 134 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 TDRD10Q5VZ19 366 aaKnown RBP10.8□□□□□ -0.68
NUP54-203ENST00000504173 DCLRE1AQ6PJP8 1040 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 TMEM173Q86WV6 379 aaPredicted RBP10.8□□□□□ -0.68
NUP54-203ENST00000504173 TRIM59Q8IWR1 403 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 DHX40Q8IX18 779 aaKnown RBP10.8□□□□□ -0.68
NUP54-203ENST00000504173 FAM200AQ8TCP9 573 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 HASPINQ8TF76 798 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 BCL7CQ8WUZ0 217 aaPredicted RBP10.8□□□□□ -0.68
NUP54-203ENST00000504173 ZNF516Q92618 1163 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 SLC35C1Q96A29 364 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 ZNF560Q96MR9 790 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 CBX8Q9HC52 389 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 TMEM8AQ9HCN3 771 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 FANCLQ9NW38 375 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 ADAM28Q9UKQ2 775 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 AGAP1Q9UPQ3 857 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 NUB1Q9Y5A7 615 aa10.8□□□□□ -0.68
NUP54-203ENST00000504173 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.8□□□□□ -0.68
NUP54-203ENST00000504173 ANO9A1A5B4 782 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 GOLGA6L19H0YKK7 550 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 TMEM189-UBE2V1I3L0A0 370 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 N4BP1O75113 896 aaKnown RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 C4BPAP04003 597 aaKnown RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 ITGB1P05556 798 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 PRKCSHP14314 528 aaPredicted RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 HOXB3P14651 431 aaPredicted RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 EEF1GP26641 437 aaKnown RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 GTF2H1P32780 548 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 PNPLA4P41247 253 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 PIK3CAP42336 1068 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 TAF6P49848 677 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 CLCN5P51795 746 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 MCCD1P59942 119 aaPredicted RBP10.79□□□□□ -0.68
NUP54-203ENST00000504173 TPM4P67936 248 aa10.79□□□□□ -0.68
NUP54-203ENST00000504173 PLCB3Q01970 1234 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms