RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CBY1Q9Y3M2 126 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 CEP350Q5VT06 3117 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 ATRNL1Q5VV63 1379 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 MRC1P22897 1456 aa5.43□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8BA8MQT2 603 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FGF18O76093 207 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 GNAI3P08754 354 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PNMA6AP0CW24 399 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 SRGAP2CP0DJJ0 459 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ACADMP11310 421 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CTNNA2P26232 953 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 EEF1GP26641 437 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 HOXC8P31273 242 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 MPLP40238 635 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 GUCY2FP51841 1108 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 C21orf59P57076 290 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PRKCQQ04759 706 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PPP2R3AQ06190 1150 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SLFN5Q08AF3 891 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PDIA6Q15084 440 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SF3A2Q15428 464 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 C10orf76Q5T2E6 689 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FAM160B1Q5W0V3 765 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FAM126BQ8IXS8 530 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 WDR60Q8WVS4 1066 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PHACTR3Q96KR7 559 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CENPOQ9BU64 300 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SLC29A3Q9BZD2 475 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TSGA10Q9BZW7 698 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 POLMQ9NP87 494 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 R3HDM2Q9Y2K5 976 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.42□□□□□ -1.54
USP54-216ENST00000498143 FAM205CA6NFA0 338 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TBX3O15119 743 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 LRP3O75074 770 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PAPOLAP51003 745 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 SCAPQ12770 1279 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SEMA3AQ14563 771 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 MLF2Q15773 248 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 CSRP2Q16527 193 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PPP6R3Q5H9R7 873 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 ARHGAP40Q5TG30 622 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FBXO38Q6PIJ6 1188 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CATSPER4Q7RTX7 472 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PCGF5Q86SE9 256 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ZC3H18Q86VM9 953 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 IFNL3Q8IZI9 196 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TMEM105Q8N8V8 129 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SNIP1Q8TAD8 396 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 CCDC12Q8WUD4 166 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 TMPRSS4Q9NRS4 437 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SPTLC3Q9NUV7 552 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SUCLA2Q9P2R7 463 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 STK39Q9UEW8 545 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PARP2Q9UGN5 583 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 NRAPQ86VF7 1730 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 A0A087X0B3 334 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CTAGE15A4D2H0 777 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 RNASEH2AO75792 299 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 PRLP01236 227 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CTAGE8P0CG41 777 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 MYL4P12829 197 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TAL1P17542 331 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 CD72P21854 359 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ACAT1P24752 427 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 IFNAR2P48551 515 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CLCN2P51788 898 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ATP11AP98196 1134 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 KLC1Q07866 573 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 STARD3Q14849 445 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CCNG2Q16589 344 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SLC45A4Q5BKX6 768 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 MAP3K21Q5TCX8 1036 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PDZD4Q76G19 769 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 BRSK2Q8IWQ3 736 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CTAGE4Q8IX94 777 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TTC39CQ8N584 583 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ATP6V1G3Q96LB4 118 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SCAND2PQ9GZW5 306 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 PIF1Q9H611 641 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 TXNRD2Q9NNW7 524 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FANCFQ9NPI8 374 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 RTEL1Q9NZ71 1219 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ZNF624Q9P2J8 865 aaPredicted RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 MCM8Q9UJA3 840 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 BLOC1S6Q9UL45 172 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 GOLGA8IPA6NC78 632 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 PROB1E7EW31 1015 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SCAMP1O15126 338 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ZBTB43O43298 467 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ATP2C2O75185 946 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 SYF2O95926 243 aaKnown RBP5.42□□□□□ -1.54
USP54-216ENST00000498143 TGFB3P10600 412 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ZNF3P17036 446 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 RAP1GDS1P52306 607 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 ZYG11AQ6WRX3 759 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 NLRP14Q86W24 1093 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 CCDC25Q86WR0 208 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 FAM3CQ92520 227 aa5.42□□□□□ -1.54
USP54-216ENST00000498143 OMA1Q96E52 524 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms