RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 OR4Q2P0C623 313 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 ZSCAN22P10073 491 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-214ENST00000496043 CEBPBP17676 345 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 TAF6P49848 677 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 EPHB3P54753 998 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 STARD6P59095 220 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 ATL3Q6DD88 541 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 TANGO2Q6ICL3 276 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 CENPPQ6IPU0 288 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 STXBP4Q6ZWJ1 553 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 HS6ST3Q8IZP7 471 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 IQUBQ8NA54 791 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 TCEAL4Q96EI5 215 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 PGLYRP2Q96PD5 576 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 GPR88Q9GZN0 384 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 TNMDQ9H2S6 317 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 ASAH2Q9NR71 780 aa13.78□□□□□ -0.2
PTPRF-214ENST00000496043 EXTL3O43909 919 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 PRPF6O94906 941 aaKnown RBP13.77□□□□□ -0.21
PTPRF-214ENST00000496043 MYL4P12829 197 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 CASP5P51878 434 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 PRKCQQ04759 706 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 SNW1Q13573 536 aaKnown RBP13.77□□□□□ -0.21
PTPRF-214ENST00000496043 ATAD1Q8NBU5 361 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 ELSPBP1Q96BH3 223 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 SAAL1Q96ER3 474 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 PYM1Q9BRP8 204 aaKnown RBP13.77□□□□□ -0.21
PTPRF-214ENST00000496043 PLA2G2FQ9BZM2 168 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 PCIF1Q9H4Z3 704 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 ZFP14Q9HCL3 533 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 KBTBD4Q9NVX7 518 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 HSFX1Q9UBD0 423 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 SLC27A5Q9Y2P5 690 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 YIPF1Q9Y548 306 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 ASB3Q9Y575 518 aa13.77□□□□□ -0.21
PTPRF-214ENST00000496043 KMT2EQ8IZD2 1858 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 MTMR11A4FU01 709 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 GOLGA8IPA6NC78 632 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 GOLGA8JA6NMD2 632 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 KPNA7A9QM74 516 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 KIAA0391O15091 583 aaKnown RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 VNN2O95498 520 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 F13A1P00488 732 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 PNPLA4P41247 253 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 CCR2P41597 374 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 TUFMP49411 452 aaKnown RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 EPHA5P54756 1037 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 TFAMQ00059 246 aaKnown RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 SMARCB1Q12824 385 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 ANGPT1Q15389 498 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 E2F4Q16254 413 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 FOXD4L6Q3SYB3 417 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 SV2CQ496J9 727 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 FAM78AQ5JUQ0 283 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 POTEHQ6S545 545 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 SHC4Q6S5L8 630 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 FOXD4L3Q6VB84 417 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 BRSK2Q8IWQ3 736 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 EFCAB13Q8IY85 973 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 KCNG4Q8TDN1 519 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 NOC3LQ8WTT2 800 aaKnown RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 DHX58Q96C10 678 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 BORCS6Q96GS4 357 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 TMEM209Q96SK2 561 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 TRIM9Q9C026 710 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 FAM13BQ9NYF5 915 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 RBAKQ9NYW8 714 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-214ENST00000496043 CFAP45Q9UL16 551 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 AGAP1Q9UPQ3 857 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 PIEZO1Q92508 2521 aa13.76□□□□□ -0.21
PTPRF-214ENST00000496043 KANSL1LA0AUZ9 987 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 PROB1E7EW31 1015 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 MOSPD3O75425 235 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 DCNP07585 359 aaKnown RBP13.75□□□□□ -0.21
PTPRF-214ENST00000496043 NBL1P41271 181 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ASIC1P78348 528 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 MLF2Q15773 248 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-214ENST00000496043 SLC39A12Q504Y0 691 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 WSCD1Q658N2 575 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 CNNM4Q6P4Q7 775 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 DNAJB7Q7Z6W7 309 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ITIH5Q86UX2 942 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 DCP1BQ8IZD4 617 aaKnown RBP13.75□□□□□ -0.21
PTPRF-214ENST00000496043 GPD1LQ8N335 351 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 CSGALNACT2Q8N6G5 542 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 SPRYD3Q8NCJ5 442 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ZSWIM2Q8NEG5 633 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 SMARCD2Q92925 531 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ZSWIM3Q96MP5 696 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ZNF560Q96MR9 790 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ASB16Q96NS5 453 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 NELL2Q99435 816 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 C7orf25Q9BPX7 421 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 CBWD1Q9BRT8 395 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 TRMT61BQ9BVS5 477 aaKnown RBP13.75□□□□□ -0.21
PTPRF-214ENST00000496043 LRRC3Q9BY71 257 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 FGFBP2Q9BYJ0 223 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 ZCWPW1Q9H0M4 648 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 CRISPLD1Q9H336 500 aa13.75□□□□□ -0.21
PTPRF-214ENST00000496043 PCDHA7Q9UN72 937 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms