RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PRR5-ARHGAP8B1AHC4 643 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 ABLIM1O14639 778 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 TRAK2O60296 914 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 SEC24AO95486 1093 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 CD72P21854 359 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 TARSP26639 723 aaKnown RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 GJB2P29033 226 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 TUFMP49411 452 aaKnown RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 KPNA1P52294 538 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 EPHA5P54756 1037 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 ARHGAP8P85298 464 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 LMNB2Q03252 620 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 GPR17Q13304 367 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 GRM2Q14416 872 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 TMEM119Q4V9L6 283 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 RNF19BQ6ZMZ0 732 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 KCNK18Q7Z418 384 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 MFSD6LQ8IWD5 586 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 KCNN1Q92952 543 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 EXOC4Q96A65 974 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 PLIN2Q99541 437 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 ASB7Q9H672 318 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 TRPV4Q9HBA0 871 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 THG1LQ9NWX6 298 aaKnown RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 CCDC39Q9UFE4 941 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 NDRG2Q9UN36 371 aaKnown RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 R3HCC1Q9Y3T6 440 aaKnown RBP12.56□□□□□ -0.4
COL6A3-213ENST00000493475 PIAS3Q9Y6X2 628 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 WDR87Q6ZQQ6 2873 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 DMDP11532 3685 aa12.56□□□□□ -0.4
COL6A3-213ENST00000493475 FOXD2O60548 495 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 LRRN2O75325 713 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 PIGRP01833 764 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 PDCP20941 246 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 PLCB2Q00722 1185 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 DHX8Q14562 1220 aaKnown RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 TMEM132DQ14C87 1099 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 POSTNQ15063 836 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 IL17AQ16552 155 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 SEZ6Q53EL9 994 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 LARP1BQ659C4 914 aaKnown RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 C2orf15Q8WU43 125 aaKnown RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 PGLYRP2Q96PD5 576 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 PNMA5Q96PV4 448 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 REEP2Q9BRK0 252 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 EPC1Q9H2F5 836 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 CHRDQ9H2X0 955 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 ZNF334Q9HCZ1 680 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 SMG5Q9UPR3 1016 aaKnown RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 EXOC7Q9UPT5 735 aa12.55□□□□□ -0.4
COL6A3-213ENST00000493475 MTF2Q9Y483 593 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-213ENST00000493475 VWA8A3KMH1 1905 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 MYH15Q9Y2K3 1946 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 LACTBL1A8MY62 500 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CHADO15335 359 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CHRM1P11229 460 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 FCARP24071 287 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CDC25CP30307 473 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 PNPLA4P41247 253 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 AARSP49588 968 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 AMPD2Q01433 879 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 POU5F1Q01860 360 aaKnown RBP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 SPAG1Q07617 926 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 DUSP4Q13115 394 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 TEAD2Q15562 447 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 ARHGAP29Q52LW3 1261 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 SPATA1Q5VX52 437 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 ADALQ6DHV7 355 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CELF5Q8N6W0 485 aaKnown RBP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 ZBTB44Q8NCP5 570 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 TCEAL4Q96EI5 215 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 TMX3Q96JJ7 454 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 ZNF560Q96MR9 790 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 PLA2G2FQ9BZM2 168 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 ATXN3LQ9H3M9 355 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 PRMT8Q9NR22 394 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 OBP2AQ9NY56 170 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CEP72Q9P209 647 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 CDV3Q9UKY7 258 aaKnown RBP12.54□□□□□ -0.4
COL6A3-213ENST00000493475 C2CD2Q9Y426 696 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 MIA3Q5JRA6 1907 aa12.54□□□□□ -0.4
COL6A3-213ENST00000493475 A0A0B4J269 797 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 A0A1W2PRU2 124 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 HEPACAM2A8MVW5 462 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 IGFBP6P24592 240 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 CNR2P34972 360 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 CXCL12P48061 93 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 TAF6P49848 677 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 ZNF131P52739 623 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 LILRA4P59901 499 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 MTAPQ13126 283 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 ZBTB6Q15916 424 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 ENOX2Q16206 610 aaKnown RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 DGKKQ5KSL6 1271 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 VITQ6UXI7 678 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 NT5DC4Q86YG4 428 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 MAP4K3Q8IVH8 894 aa12.53□□□□□ -0.4
COL6A3-213ENST00000493475 DCP1BQ8IZD4 617 aaKnown RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 MAML2Q8IZL2 1156 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-213ENST00000493475 SUMF1Q8NBK3 374 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms