RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 AVPR1AP37288 418 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 ALDH18A1P54886 795 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RBBP8NLQ8NC74 664 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 DDI1Q8WTU0 396 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 ZKSCAN4Q969J2 545 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 FBXO32Q969P5 355 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 FBXO10Q9UK96 956 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 STK36Q9NRP7 1315 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 F5H5T6 163 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 HOXA2O43364 376 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 CLASP2O75122 1294 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 EGFRP00533 1210 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 PGK2P07205 417 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 CDC27P30260 824 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 EPHX2P34913 555 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 EPHB3P54753 998 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 CAMK2GQ13555 558 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 SARM1Q6SZW1 724 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 DIS3LQ8TF46 1054 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 HASPINQ8TF76 798 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 ANKRD49Q8WVL7 239 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 ADAM33Q9BZ11 813 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 NDE1Q9NXR1 346 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 FLT1P17948 1338 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 PRR23D1E9PI22 279 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RTN2O75298 545 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 PRR23D2P0DMB1 279 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 LRRC14Q15048 493 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 P3H1Q32P28 736 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RPRD1AQ96P16 312 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 TMEM39AQ9NV64 488 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 WWOXQ9NZC7 414 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RPS6KB2Q9UBS0 482 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 FAM107AO95990 144 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 WEE2P0C1S8 567 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 HORMAD1Q86X24 394 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RIN2Q8WYP3 895 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 TMA16Q96EY4 203 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 SENP7Q9BQF6 1050 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 SENP2Q9HC62 589 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 GBA2Q9HCG7 927 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 ABCB6Q9NP58 842 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 PRMT7Q9NVM4 692 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 CHUKO15111 745 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 LRRC23Q53EV4 343 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 MIB1Q86YT6 1006 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RCOR2Q8IZ40 523 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.74□□□□□ -0.214e-7■■■■■ 58.1
COL6A3-212ENST00000491769 AHCYL2Q96HN2 611 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 DDX47Q9H0S4 455 aaKnown RBP13.74□□□□□ -0.21
COL6A3-212ENST00000491769 RAB6BQ9NRW1 208 aa13.74□□□□□ -0.21
COL6A3-212ENST00000491769 DDX39BQ13838 428 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 MOV10L1Q9BXT6 1211 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 STX7O15400 261 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 CYTH3O43739 400 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 KRT20P35900 424 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 MAGOHP61326 146 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 TADA1Q96BN2 335 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 VCPKMTQ9H867 229 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 USE1Q9NZ43 259 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 PRR12Q9ULL5 1215 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 STARD3Q14849 445 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 CTXN3Q4LDR2 81 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 CEP170Q5SW79 1584 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 NFRKBQ6P4R8 1299 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 PRR23CQ6ZRP0 262 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 ATG4CQ96DT6 458 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 WDR35Q9P2L0 1181 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 F8W810 466 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 ENTPD3O75355 529 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 TNNI3P19429 210 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 RPS12P25398 132 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 INPP5AQ14642 412 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 FAM151AQ8WW52 585 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 OSBPL3Q9H4L5 887 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 B3GAT3O94766 335 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 LVRNQ6Q4G3 990 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 CDR2LQ86X02 465 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 PCSK9Q8NBP7 692 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 SPACA7Q96KW9 195 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 ACTR5Q9H9F9 607 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 XPO7Q9UIA9 1087 aaKnown RBP13.73□□□□□ -0.21
COL6A3-212ENST00000491769 PLA2G4CQ9UP65 541 aa13.73□□□□□ -0.21
COL6A3-212ENST00000491769 WDR47O94967 919 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 KLRC2P26717 231 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 GPC1P35052 558 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 AP2B1P63010 937 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 SNRNP35Q16560 246 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 GSPT2Q8IYD1 628 aaKnown RBP13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CSGALNACT1Q8TDX6 532 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 HPDLQ96IR7 371 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 NDOR1Q9UHB4 597 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CRB1P82279 1406 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 UGP2Q16851 508 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 CCDC142Q17RM4 750 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 VN1R5Q7Z5H4 357 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 IFNEQ86WN2 208 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 AGBL1Q96MI9 1066 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 PRR36Q9H6K5 1346 aa13.72□□□□□ -0.21
COL6A3-212ENST00000491769 MAPRE1Q15691 268 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms