RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DNERQ8NFT8 737 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 SKA2Q8WVK7 121 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CENPKQ9BS16 269 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 MMTAG2Q9BU76 263 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 DDX23Q9BUQ8 820 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 MTMR12Q9C0I1 747 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 INTS13Q9NVM9 706 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 GPRC5DQ9NZD1 345 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 GTF3C4Q9UKN8 822 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 ENO4A6NNW6 628 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 TADA2AO75478 443 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 TOM1L1O75674 476 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 ITGB3P05106 788 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 CHN1P15882 459 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 FGFR4P22455 802 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 PDIA2Q13087 525 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 SPARCL1Q14515 664 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 METTL7BQ6UX53 244 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 NIPA1Q7RTP0 329 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 PURBQ96QR8 312 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 WDR35Q9P2L0 1181 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 PHF2O75151 1096 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 NPM3O75607 178 aaKnown RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 ZBED8Q8IZ13 594 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 OR2W6PQ8NHA6 318 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 HPDLQ96IR7 371 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 BTBD6Q96KE9 485 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 LRRC37BQ96QE4 947 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 TTC1Q99614 292 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 WDR18Q9BV38 432 aa11.6□□□□□ -0.55
HDAC6-228ENST00000486227 USP15Q9Y4E8 981 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-228ENST00000486227 FRMPD4Q14CM0 1322 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 PSMD10O75832 226 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 YY1P25490 414 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 CDR2Q01850 454 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 DGKZQ13574 1117 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 AMIGO3Q86WK7 504 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 TEX9Q8N6V9 391 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 C4orf32Q8N8J7 132 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 UBA3Q8TBC4 463 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 DEPDC1BQ8WUY9 529 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 DNAJC19Q96DA6 116 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 NT5C1AQ9BXI3 368 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 OSBPL8Q9BZF1 889 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 SIK2Q9H0K1 926 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 IQANK1A0A1B0GTG1 560 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 NPTXRO95502 500 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 CYP11B1P15538 503 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 SCTRP47872 440 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ROR1Q01973 937 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 CYP24A1Q07973 514 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ACAD10Q6JQN1 1059 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 FAM47EQ6ZV65 393 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 SPATA21Q7Z572 469 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 RCOR2Q8IZ40 523 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ST13P4Q8IZP2 240 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 APPL2Q8NEU8 664 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 AENQ8WTP8 325 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 SLC20A1Q8WUM9 679 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 DHX38Q92620 1227 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 USH1CQ9Y6N9 552 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 STRNO43815 780 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 PPP1R11O60927 126 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 SYF2O95926 243 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ITGA4P13612 1032 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 BRAFP15056 766 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 EIF3EP60228 445 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 COG7P83436 770 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 PPATQ06203 517 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 NR1H3Q13133 447 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 HEATR6Q6AI08 1181 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF677Q86XU0 584 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 C1orf131Q8NDD1 294 aaKnown RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 TMC2Q8TDI7 906 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 AFG1LQ8WV93 481 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ELMO3Q96BJ8 720 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 NUDCD1Q96RS6 583 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 ASCC2Q9H1I8 757 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-228ENST00000486227 THEGQ9P2T0 379 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 TLK1Q9UKI8 766 aa11.59□□□□□ -0.55
HDAC6-228ENST00000486227 CYP3A7-CYP3A51PA0A087WV96 503 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 C17orf102A2RUQ5 167 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 KRT37O76014 449 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 GSTA1P08263 222 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 GSTA2P09210 222 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 CYP3A7P24462 503 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 OAZ1P54368 228 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 INHBEP58166 350 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 MYBPC2Q14324 1141 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 GLRA4Q5JXX5 417 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 CYP4A22Q5TCH4 519 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 C1orf186Q6ZWK4 172 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 JAMLQ86YT9 394 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 NDUFAF2Q8N183 169 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 ARHGAP18Q8N392 663 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 TGS1Q96RS0 853 aaKnown RBP11.58□□□□□ -0.55
HDAC6-228ENST00000486227 OSGEPQ9NPF4 335 aa11.58□□□□□ -0.55
HDAC6-228ENST00000486227 GTPBP10A4D1E9 387 aaKnown RBP11.58□□□□□ -0.56
HDAC6-228ENST00000486227 YDJCA8MPS7 323 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms