RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 LRRIQ3A6PVS8 624 aaPredicted RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 GOLGA6L19H0YKK7 550 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 M0QZQ0 153 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 C2CD2LO14523 706 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 FSCN2O14926 492 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PMM2O15305 246 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 OAZ2O95190 189 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 CSPG5O95196 566 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 STAU1O95793 577 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 AFPP02771 609 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ALADP13716 330 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PCSK1P29120 753 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ELF1P32519 619 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PIK3CAP42336 1068 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 GCLMP48507 274 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 AARSP49588 968 aaKnown RBP eCLIP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 MXI1P50539 228 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PMS1P54277 932 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 MARSP56192 900 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 MCCD1P59942 119 aaPredicted RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ERVFC1P60507 584 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 YWHAEP62258 255 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 TSPY1Q01534 308 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 SOX4Q06945 474 aaPredicted RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PSMD5Q16401 504 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ZNF699Q32M78 642 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 WDR72Q3MJ13 1102 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 CTXN3Q4LDR2 81 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ZNF667Q5HYK9 610 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 KIAA0319Q5VV43 1072 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 OVOS1Q6IE37 1185 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ZNF280DQ6N043 979 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 SV2AQ7L0J3 742 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 DCP1BQ8IZD4 617 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 TOP6BLQ8N6T0 577 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 FBXL13Q8NEE6 735 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ZSWIM2Q8NEG5 633 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 OR5B17Q8NGF7 314 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 HASPINQ8TF76 798 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PIK3R5Q8WYR1 880 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 RABGGTAQ92696 567 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 CASP10Q92851 521 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PABPC5Q96DU9 382 aaKnown RBP8.88□□□□□ -0.99
SF3A1-208ENST00000485618 EEF2KMTQ96G04 330 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 SENP8Q96LD8 212 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 MMS19Q96T76 1030 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 PAAF1Q9BRP4 392 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 GPR62Q9BZJ7 368 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 ZBP1Q9H171 429 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 SNX25Q9H3E2 840 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 RXFP1Q9HBX9 757 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 DZANK1Q9NVP4 752 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 CLDND1Q9NY35 253 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 HCSTQ9UBK5 93 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 NFE2L3Q9Y4A8 694 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 SNX9Q9Y5X1 595 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 TRIP11Q15643 1979 aa8.88□□□□□ -0.99
SF3A1-208ENST00000485618 NLRC5Q86WI3 1866 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 SYCE3A1L190 88 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 PES1O00541 588 aaKnown RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 MEFVO15553 781 aaPredicted RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 DCXO43602 365 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 B4GALT3O60512 393 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 C4BPAP04003 597 aaKnown RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 CYP11A1P05108 521 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 HOXB8P17481 243 aaPredicted RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 DNAJB1P25685 340 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 ZNF165P49910 485 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 GUCY2FP51841 1108 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 PTPN14Q15678 1187 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 MAPRE1Q15691 268 aaKnown RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 ZSCAN23Q3MJ62 389 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 ANO6Q4KMQ2 910 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 FILIP1LQ4L180 1135 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 VARS2Q5ST30 1063 aaKnown RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 FKBP15Q5T1M5 1219 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 TPGS2Q68CL5 300 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 TMEM173Q86WV6 379 aaPredicted RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 RNF168Q8IYW5 571 aaPredicted RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 EFHBQ8N7U6 833 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 HDAC7Q8WUI4 952 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 BORCS6Q96GS4 357 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 CNOT6LQ96LI5 555 aaKnown RBP8.87□□□□□ -0.99
SF3A1-208ENST00000485618 CXCL16Q9H2A7 254 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 PLEKHA4Q9H4M7 779 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 IGFLR1Q9H665 355 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 MMRN2Q9H8L6 949 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 VRTNQ9H8Y1 702 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 CYP3A43Q9HB55 503 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 RAB20Q9NX57 234 aa8.87□□□□□ -0.99
SF3A1-208ENST00000485618 PIEZO1Q92508 2521 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 KCNJ18B7U540 433 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 EFEMP2O95967 443 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 GLUD1P00367 558 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 HLA-DRAP01903 254 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 CNPP09543 421 aaKnown RBP8.86□□□□□ -0.99
SF3A1-208ENST00000485618 TRIM49P0CI25 452 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 TRIM49CP0CI26 452 aa8.86□□□□□ -0.99
SF3A1-208ENST00000485618 TBXAS1P24557 533 aaPredicted RBP8.86□□□□□ -0.99
SF3A1-208ENST00000485618 GNL1P36915 607 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms