RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 RXRBP28702 533 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 SSTR1P30872 391 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ACAD10Q6JQN1 1059 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ALYREFQ86V81 257 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ARHGAP24Q8N264 748 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 FBXO27Q8NI29 283 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 TUBB6Q9BUF5 446 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 SERPINB13Q9UIV8 391 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ANPEPP15144 967 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 DEUP1Q05D60 604 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 AP3B2Q13367 1082 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 CCNG2Q16589 344 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 SHROOM1Q2M3G4 852 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 Q4G0T1 1027 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 SYDE2Q5VT97 1194 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 DDX27Q96GQ7 796 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 DNPEPQ9ULA0 475 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 FCHO1O14526 889 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 CENPCQ03188 943 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 TFDP1Q14186 410 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 GSTA3Q16772 222 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 C6orf163Q5TEZ5 329 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ISLR2Q6UXK2 745 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 PLEKHO2Q8TD55 490 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 NMD3Q96D46 503 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ECSITQ9BQ95 431 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 NMUR2Q9GZQ4 415 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 ETNK2Q9NVF9 386 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 UMODL1Q5DID0 1318 aa19.8■□□□□ 0.76
CCDC88B-207ENST00000479965 CIB2O75838 187 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 CDK16Q00536 496 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 C1orf146Q5VVC0 180 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 SESTD1Q86VW0 696 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 KLHL23Q8NBE8 558 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 SEMA4DQ92854 862 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 NR1H4Q96RI1 486 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 CD209Q9NNX6 404 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 RHBDL2Q9NX52 303 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 DDX60LQ5H9U9 1706 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 FAM237BA0A1B0GVD1 139 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 C6orf229H3BNL8 230 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 DDX39AO00148 427 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ATP2A1O14983 1001 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 YY1P25490 414 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ATP13A4Q4VNC1 1196 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ANKS1BQ7Z6G8 1248 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ST13P4Q8IZP2 240 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 CCDC110Q8TBZ0 833 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 HIC2Q96JB3 615 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 FAM84AQ96KN4 292 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ZWILCHQ9H900 591 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 C10orf71Q711Q0 1435 aa19.79■□□□□ 0.76
CCDC88B-207ENST00000479965 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 ARHGEF35A5YM69 484 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 RNASEH1O60930 286 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 PSMC4P43686 418 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 ARL4CP56559 192 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 RASA2Q15283 850 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 NFIL3Q16649 462 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 RIPOR1Q6ZS17 1223 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 HSD17B14Q9BPX1 270 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 PKD2L1Q9P0L9 805 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 WRAP73Q9P2S5 460 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 F5H6K3 240 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 UFL1O94874 794 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 BGNP21810 368 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 KLRC2P26717 231 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 TAS2R40P59535 323 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 SPDYAQ5MJ70 313 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 SLC10A5Q5PT55 438 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 SAMD1Q6SPF0 538 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 MOXD1Q6UVY6 613 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 ZNF398Q8TD17 642 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 EBF3Q9H4W6 596 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 ATXN10Q9UBB4 475 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 NAV1Q8NEY1 1877 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 PHLPP1O60346 1717 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 TXNDC9O14530 226 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 DNALI1O14645 258 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 CDK7P50613 346 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 MTMR2Q13614 643 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 SLC15A2Q16348 729 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 TPTE2Q6XPS3 522 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 CEP128Q6ZU80 1094 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 CENPUQ71F23 418 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 TDRPQ86YL5 185 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 DDX4Q9NQI0 724 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 CLIC5Q9NZA1 410 aa19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 PPARGC1AQ9UBK2 798 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-207ENST00000479965 PFDN1O60925 122 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 KITP10721 976 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 RARBP10826 455 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 GEMIN4P57678 1058 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 CDC16Q13042 620 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 RASSF3Q86WH2 238 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 PASD1Q8IV76 773 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 OXNAD1Q96HP4 312 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 FAM111AQ96PZ2 611 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 PI4K2AQ9BTU6 479 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms