RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CELSR1Q9NYQ6 3014 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CRYBG3Q68DQ2 2970 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 SPG11Q96JI7 2443 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 TTLL13PA6NNM8 815 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 E9PAM4 449 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 TMEM189-UBE2V1I3L0A0 370 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 K7EQS6 105 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ANP32CO43423 234 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 SRGAP2CP0DJJ0 459 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ARF4P18085 180 aaPredicted RBP5.34□□□□□ -1.55
USP4-209ENST00000475873 DRD1P21728 446 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 GJA4P35212 333 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 MCM2P49736 904 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CLK2P49760 499 aaKnown RBP5.34□□□□□ -1.55
USP4-209ENST00000475873 NT5C2P49902 561 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ARPP19P56211 112 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ANTXR2P58335 489 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CYP4F8P98187 520 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CDC42EP1Q00587 391 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 PLCB2Q00722 1185 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 LAMTOR4Q0VGL1 99 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 NFATC3Q12968 1075 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 RTP5Q14D33 572 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 GAB4Q2WGN9 574 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 FBXO43Q4G163 708 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 SPDYCQ5MJ68 293 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 WWC2Q6AWC2 1192 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ZNF574Q6ZN55 896 aaPredicted RBP5.34□□□□□ -1.55
USP4-209ENST00000475873 ANO5Q75V66 913 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 SRGAP1Q7Z6B7 1085 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 GALNT15Q8N3T1 639 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 TTC9BQ8N6N2 239 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 EXD3Q8N9H8 876 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CEP76Q8TAP6 659 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 PRPF31Q8WWY3 499 aaKnown RBP5.34□□□□□ -1.55
USP4-209ENST00000475873 TMEM143Q96AN5 459 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ACDQ96AP0 544 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 NXPE2Q96DL1 559 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 LPIN3Q9BQK8 851 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ZNF577Q9BSK1 485 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 PI4K2AQ9BTU6 479 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 GPR88Q9GZN0 384 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 IL25Q9H293 177 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 DCTPP1Q9H773 170 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 GOLGA2P5Q9HBQ8 144 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 ZDHHC4Q9NPG8 344 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 CD93Q9NPY3 652 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 DISC1Q9NRI5 854 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 NRBP2Q9NSY0 501 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 MMP17Q9ULZ9 603 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 MAN2B2Q9Y2E5 1009 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 YIPF1Q9Y548 306 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 DENND4CQ5VZ89 1909 aa5.34□□□□□ -1.55
USP4-209ENST00000475873 TMEM131Q92545 1883 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 WDR64B1ANS9 1081 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 SGK1O00141 431 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 RRP8O43159 456 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 BRINP1O60477 761 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 ADAM23O75077 832 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 NPTXRO95502 500 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 RXRAP19793 462 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 MX1P20591 662 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 ELF1P32519 619 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 CLCNKBP51801 687 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 SEC13P55735 322 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 NPEPPSP55786 919 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 ZNF33AQ06730 810 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 SOX4Q06945 474 aaPredicted RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 SCRN1Q12765 414 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 ELAVL2Q12926 359 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 PSMD2Q13200 908 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 SERINC3Q13530 473 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 MRPL58Q14197 206 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 CCDC157Q569K6 752 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 GPR158Q5T848 1215 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 KIAA1614Q5VZ46 1190 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 IQCEQ6IPM2 695 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 NOTUMQ6P988 496 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 B3GNT9Q6UX72 402 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 RNF19BQ6ZMZ0 732 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 ANKS3Q6ZW76 656 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 HAUS6Q7Z4H7 955 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 TTC30AQ86WT1 665 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 TMEM130Q8N3G9 435 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 RNF149Q8NC42 400 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 LEMD2Q8NC56 503 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 BEST2Q8NFU1 509 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 SETD7Q8WTS6 366 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 SNRNP27Q8WVK2 155 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 FGF11Q92914 225 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 EVI5LQ96CN4 794 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 NAF1Q96HR8 494 aaKnown RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 ZNF512Q96ME7 567 aaPredicted RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.33□□□□□ -1.56
USP4-209ENST00000475873 SLC46A2Q9BY10 475 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 KRT23Q9C075 422 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 UNC45AQ9H3U1 944 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 IL21Q9HBE4 155 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 RIC8AQ9NPQ8 531 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 BMP2KQ9NSY1 1161 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms