RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SLC6A15Q9H2J7 730 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 RPL26L1Q9UNX3 145 aaKnown RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 M0QX08 132 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 NEMP1O14524 444 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 OPLAHO14841 1288 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 SULT1B1O43704 296 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 THEGLP0DJG4 465 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 PLCG2P16885 1265 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 CCNE1P24864 410 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 TYK2P29597 1187 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 STAT5AP42229 794 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 STAT5BP51692 787 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 CDC16Q13042 620 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 RYBPQ8N488 228 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 DDX17Q92841 729 aaKnown RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 SERPINB12Q96P63 405 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 DYRK4Q9NR20 520 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 TOR4AQ9NXH8 423 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 WDR35Q9P2L0 1181 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 CLEC11AQ9Y240 323 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 GFPT2O94808 682 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 CYP7A1P22680 504 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 PPARAQ07869 468 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 MTF1Q14872 753 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 EIF2S3LQ2VIR3 472 aaKnown RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF574Q6ZN55 896 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 RAB43Q86YS6 212 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 MAB21L3Q8N8X9 362 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 TADA1Q96BN2 335 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 AIFM2Q9BRQ8 373 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF304Q9HCX3 659 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 SLC35C2Q9NQQ7 365 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF624Q9P2J8 865 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 GPN3Q9UHW5 284 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF112Q9UJU3 913 aa9.38□□□□□ -0.91
COL6A3-210ENST00000473258 RUVBL2Q9Y230 463 aaKnown RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 FAM32AQ9Y421 112 aaKnown RBP9.38□□□□□ -0.91
COL6A3-210ENST00000473258 KRT87PA6NCN2 255 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 LGALS16A8MUM7 142 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 FDPSP14324 419 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 HSF2Q03933 536 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 TIMM50Q3ZCQ8 353 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 IZUMO3Q5VZ72 239 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 TMEM132EQ6IEE7 984 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 PYHIN1Q6K0P9 492 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF544Q6NX49 715 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 EXOC3L1Q86VI1 746 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 OR6Y1Q8NGX8 325 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 EFCAB1Q9HAE3 211 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 TBCCD1Q9NVR7 557 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 NFKBIL1Q9UBC1 381 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 MRPS7Q9Y2R9 242 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CUX2O14529 1486 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 PLEKHG3A1L390 1219 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 RAG1P15918 1043 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 TNNI1P19237 187 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 MAPK12P53778 367 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 MARSP56192 900 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CALCRLQ16602 461 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CENPPQ6IPU0 288 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 C18orf25Q96B23 403 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 METTL8Q9H825 291 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 RBM12Q9NTZ6 932 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF446Q9NWS9 450 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CDY2AQ9Y6F7 541 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CDY1Q9Y6F8 540 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 SSNA1O43805 119 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 SASH3O75995 380 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 ZBTB11O95625 1053 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 NPR3P17342 541 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 EIF4BP23588 611 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 FAM83BQ5T0W9 1011 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 ITPRIPL1Q6GPH6 555 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 BARGINQ6ZT62 677 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 BRSK2Q8IWQ3 736 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 E2F7Q96AV8 911 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 C17orf80Q9BSJ5 609 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CAB39LQ9H9S4 337 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 STOX2Q9P2F5 926 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 TPRKBQ9Y3C4 175 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 CBY1Q9Y3M2 126 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 KDM3AQ9Y4C1 1321 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 MYOM3Q5VTT5 1437 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 PPM1BO75688 479 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 C1DQ13901 141 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 MAPK6Q16659 721 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 KCNT1Q5JUK3 1230 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 KSR2Q6VAB6 950 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 FRMD7Q6ZUT3 714 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 DDIASQ8IXT1 998 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 AIFM3Q96NN9 605 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 C7orf25Q9BPX7 421 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 PCMTD2Q9NV79 361 aa9.37□□□□□ -0.91
COL6A3-210ENST00000473258 ATXN2Q99700 1313 aaKnown RBP9.37□□□□□ -0.91
COL6A3-210ENST00000473258 C2orf74A8MZ97 194 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 BMP10O95393 424 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 IFI30P13284 250 aa9.36□□□□□ -0.91
COL6A3-210ENST00000473258 TATP17735 454 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 EIF3EP60228 445 aaKnown RBP9.36□□□□□ -0.91
COL6A3-210ENST00000473258 IFRD2Q12894 506 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms