RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 SPOCK2Q92563 424 aa22.35■■□□□ 1.17
COL18A1-207ENST00000473212 GRAMD1AQ96CP6 724 aa22.35■■□□□ 1.17
COL18A1-207ENST00000473212 MRRFQ96E11 262 aaKnown RBP22.35■■□□□ 1.17
COL18A1-207ENST00000473212 KIF9Q9HAQ2 790 aa22.35■■□□□ 1.17
COL18A1-207ENST00000473212 CTDP1Q9Y5B0 961 aaPredicted RBP22.35■■□□□ 1.17
COL18A1-207ENST00000473212 PCDHB4Q9Y5E5 795 aa22.35■■□□□ 1.17
COL18A1-207ENST00000473212 PSTPIP1O43586 416 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 UNC5CO95185 931 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 C4BPAP04003 597 aaKnown RBP22.34■■□□□ 1.17
COL18A1-207ENST00000473212 HARSP12081 509 aaKnown RBP22.34■■□□□ 1.17
COL18A1-207ENST00000473212 GCAP28676 217 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 LIG4P49917 911 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 CXCL9Q07325 125 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 DNAJC3Q13217 504 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ZACNQ401N2 412 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ZCCHC9Q8N567 271 aaKnown RBP22.34■■□□□ 1.17
COL18A1-207ENST00000473212 OR5B17Q8NGF7 314 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 TEPSINQ96N21 525 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 FNBP1Q96RU3 617 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 MYLK2Q9H1R3 596 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 PDLIM7Q9NR12 457 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ANKFY1Q9P2R3 1169 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 VWA5AO00534 786 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 PIAS1O75925 651 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 NOMO3P69849 1222 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ATP11AP98196 1134 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 BRDTQ58F21 947 aaPredicted RBP22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ZNF570Q96NI8 536 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 KIAA1683Q9H0B3 1180 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 CYP26B1Q9NR63 512 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 ARHGAP28Q9P2N2 729 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 NUB1Q9Y5A7 615 aa22.34■■□□□ 1.17
COL18A1-207ENST00000473212 POC1B-GALNT4F8VUJ3 575 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 ASMTLO95671 621 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 SLC8A3P57103 927 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 MAP3K10Q02779 954 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 TRABD2AQ86V40 505 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 ZNF677Q86XU0 584 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 KATNAL2Q8IYT4 538 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 MAB21L3Q8N8X9 362 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.33■■□□□ 1.17
COL18A1-207ENST00000473212 FBF1Q8TES7 1133 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 DNPEPQ9ULA0 475 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 TTLL13PA6NNM8 815 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 PEX10O60683 326 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 BANF1O75531 89 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 GNA15P30679 374 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 SKIV2L2P42285 1042 aaKnown RBP22.33■■□□□ 1.17
COL18A1-207ENST00000473212 CCDC15Q0P6D6 951 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 FSTL1Q12841 308 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 ZFYVE27Q5T4F4 411 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 LIN9Q5TKA1 542 aa22.33■■□□□ 1.17
COL18A1-207ENST00000473212 UTP4Q969X6 686 aaKnown RBP22.33■■□□□ 1.17
COL18A1-207ENST00000473212 TLR3O15455 904 aaKnown RBP22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ZC3H11AO75152 810 aaKnown RBP eCLIP22.32■■□□□ 1.167e-16■□□□□ 8.1
COL18A1-207ENST00000473212 MTM1Q13496 603 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 PRAMEF18Q5VWM3 479 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ASAP3Q8TDY4 903 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 LPAR1Q92633 364 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ERP27Q96DN0 273 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 CFAP57Q96MR6 1250 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 C10orf88Q9H8K7 445 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 SLCO1B3Q9NPD5 702 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ARID2Q68CP9 1835 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ABHD2P08910 425 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 ATF7P17544 494 aaPredicted RBP22.32■■□□□ 1.16
COL18A1-207ENST00000473212 PAX7P23759 505 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 SP2Q02086 613 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 WDR44Q5JSH3 913 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 FKBP1CQ5VVH2 108 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 VSIG1Q86XK7 387 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 RIBC1Q8N443 379 aaPredicted RBP22.32■■□□□ 1.16
COL18A1-207ENST00000473212 EXD1Q8NHP7 514 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 KIAA1586Q9HCI6 787 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 AGO2Q9UKV8 859 aaKnown RBP22.32■■□□□ 1.16
COL18A1-207ENST00000473212 PHTF1Q9UMS5 762 aa22.32■■□□□ 1.16
COL18A1-207ENST00000473212 EXTL3O43909 919 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 POTEJP0CG39 1038 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 ATP4AP20648 1035 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 GARTP22102 1010 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 ACTR2P61160 394 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 CUL2Q13617 745 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 ZNF394Q53GI3 561 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 TARS2Q9BW92 718 aaKnown RBP22.31■■□□□ 1.16
COL18A1-207ENST00000473212 TXLNGQ9NUQ3 528 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 GRID1Q9ULK0 1009 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 STARD13Q9Y3M8 1113 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 POLGP54098 1239 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-207ENST00000473212 BPIFB4P59827 614 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 ZNF252P-AS1Q0IIN9 211 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 PKN2Q16513 984 aaKnown RBP22.31■■□□□ 1.16
COL18A1-207ENST00000473212 SNRNP48Q6IEG0 339 aaKnown RBP22.31■■□□□ 1.16
COL18A1-207ENST00000473212 C4orf33Q8N1A6 199 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 TTLL6Q8N841 843 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 ZBED3Q96IU2 234 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-207ENST00000473212 TRABDQ9H4I3 376 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 MYOZ2Q9NPC6 264 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 CHKBQ9Y259 395 aa22.31■■□□□ 1.16
COL18A1-207ENST00000473212 DGAT1O75907 488 aa22.3■■□□□ 1.16
COL18A1-207ENST00000473212 ATP2A2P16615 1042 aaKnown RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms