RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PRDX5P30044 214 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MARCKSL1P49006 195 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CDC16Q13042 620 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MSL1Q68DK7 614 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SLC35G2Q8TBE7 412 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SDR42E1Q8WUS8 393 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SLC7A3Q8WY07 619 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MFSD14AQ96MC6 490 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 TSNARE1Q96NA8 513 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ARHGEF10LQ9HCE6 1279 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 FOCADQ5VW36 1801 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SMCO2A6NFE2 343 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 LDHCP07864 332 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC130P13994 396 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ACVR2AP27037 513 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ARL1P40616 181 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CTCFP49711 727 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 RNASE9P60153 205 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PSMC1P62191 440 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SP4Q02446 784 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 GALNT2Q10471 571 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 FAM196AQ6ZSG2 479 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ILDR2Q71H61 639 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MAEAQ7L5Y9 396 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 HELBQ8NG08 1087 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC17Q96LX7 622 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 NDNQ99608 321 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SUDS3Q9H7L9 328 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PALMDQ9NP74 551 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 UBAP1Q9NZ09 502 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SBF2Q86WG5 1849 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ZBTB5O15062 677 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 NMT2O60551 498 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PSMG1O95456 288 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PLCG2P16885 1265 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 RGS2P41220 211 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MARK2Q7KZI7 788 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 KRT27Q7Z3Y8 459 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC25Q86WR0 208 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 NUP93Q8N1F7 819 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CHAC2Q8WUX2 184 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SENP6Q9GZR1 1112 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PPANQ9NQ55 473 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 AGPAT3Q9NRZ7 376 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 KCNK4Q9NYG8 393 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SLC7A8Q9UHI5 535 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 NARFQ9UHQ1 456 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 HERC5Q9UII4 1024 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PTBP2Q9UKA9 531 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 STX8Q9UNK0 236 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 DENND3A2RUS2 1198 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MATN2O00339 956 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 FAM13AO94988 1023 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PLA2G4BP0C869 781 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 RPS8P62241 208 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SF3A3Q12874 501 aaKnown RBP eCLIP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ASIC2Q16515 512 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 UGT2A3Q6UWM9 527 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ALLCQ8N6M5 410 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 KIFAP3Q92845 792 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 LRRC39Q96DD0 335 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 AGPAT1Q99943 283 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CELF4Q9BZC1 486 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PGAP2Q9UHJ9 254 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 BLOC1S6Q9UL45 172 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 MYH7BA7E2Y1 1941 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PSTPIP1O43586 416 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PYGMP11217 842 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 DNAJB1P25685 340 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CXCR5P32302 372 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 GRIA2P42262 883 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 RASSF2P50749 326 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 GPX6P59796 221 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 PPP3CAQ08209 521 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 SFSWAPQ12872 951 aaKnown RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 TMPRSS6Q8IU80 811 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 FAM133AQ8N9E0 248 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 KREMEN1Q96MU8 473 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ETNK1Q9HBU6 452 aa5.66□□□□□ -1.5
SYNE1-220ENST00000471834 CCNL1Q9UK58 526 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-220ENST00000471834 ADGRA2Q96PE1 1338 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 NRXN2Q9P2S2 1712 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC160A6NGH7 325 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 C3orf70A6NLC5 250 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SOBPA7XYQ1 873 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 DDX39AO00148 427 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 XRCC5P13010 732 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 KRT15P19012 456 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SHMT1P34896 483 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 UBXN2AP68543 259 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 MAMLD1Q13495 774 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SYCP2LQ5T4T6 812 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC33Q8N5R6 958 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC89Q8N998 374 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 SLITRK3O94933 977 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 ITGA2BP08514 1039 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 VIL1P09327 827 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 DYNLL1P63167 89 aaKnown RBP5.65□□□□□ -1.5
SYNE1-220ENST00000471834 GPC5P78333 572 aa5.65□□□□□ -1.5
SYNE1-220ENST00000471834 GRSF1Q12849 480 aaKnown RBP eCLIP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms