RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MMRN2Q9H8L6 949 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 VRTNQ9H8Y1 702 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 TMEM8AQ9HCN3 771 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 DSEQ9UL01 958 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 SNX9Q9Y5X1 595 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 TRIP11Q15643 1979 aa12.85□□□□□ -0.35
VPS13D-204ENST00000469054 MYO7AQ13402 2215 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 ADAM12O43184 909 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 TBC1D4O60343 1298 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 HUS1O60921 280 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 HLA-DRAP01903 254 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 MXI1P50539 228 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 KCNC3Q14003 757 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 SGSM1Q2NKQ1 1148 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 WDR72Q3MJ13 1102 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 CTXN3Q4LDR2 81 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 OVOS1Q6IE37 1185 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 SLC8B1Q6J4K2 584 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 RSPO2Q6UXX9 243 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-204ENST00000469054 TMEM184AQ6ZMB5 413 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 C11orf57Q6ZUT1 292 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-204ENST00000469054 DPH6Q7L8W6 267 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 METTL23Q86XA0 190 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 IRF2BP1Q8IU81 584 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 CREBRFQ8IUR6 639 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 GLYCTKQ8IVS8 523 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 TOP6BLQ8N6T0 577 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 SLC22A17Q8WUG5 538 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 OXCT2Q9BYC2 517 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-204ENST00000469054 THAP9Q9H5L6 903 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 CLDND1Q9NY35 253 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 HCFC2Q9Y5Z7 792 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 PLXNA4Q9HCM2 1894 aa12.84□□□□□ -0.35
VPS13D-204ENST00000469054 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.83□□□□□ -0.36
VPS13D-204ENST00000469054 SYCE3A1L190 88 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 LINC01565O15544 149 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 C1RP00736 705 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 OR1D2P34982 312 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 PIK3CAP42336 1068 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 CLCN4P51793 760 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 RBM10P98175 930 aaKnown RBP12.83□□□□□ -0.36
VPS13D-204ENST00000469054 RAB33AQ14088 237 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 SOWAHAQ2M3V2 549 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 ZNF699Q32M78 642 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 LLGL2Q6P1M3 1020 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 EP400NLQ6ZTU2 488 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 PALB2Q86YC2 1186 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 TRIM59Q8IWR1 403 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 TMEM86AQ8N2M4 240 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 PDCL2Q8N4E4 241 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 VN1R2Q8NFZ6 395 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 SPATA18Q8TC71 538 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 TAS1R2Q8TE23 839 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 TAF4BQ92750 862 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 CASP10Q92851 521 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 HLA-CQ95604 372 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 CNOT6LQ96LI5 555 aaKnown RBP12.83□□□□□ -0.36
VPS13D-204ENST00000469054 FUCA2Q9BTY2 467 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 DNAJC25Q9H1X3 360 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 NXF1Q9UBU9 619 aaKnown RBP12.83□□□□□ -0.36
VPS13D-204ENST00000469054 FBXL5Q9UKA1 691 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 L1RE1Q9UN81 338 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 COG5Q9UP83 839 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS13D-204ENST00000469054 CDY1Q9Y6F8 540 aa12.83□□□□□ -0.36
VPS13D-204ENST00000469054 OR6C75A6NL08 312 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 PMM2O15305 246 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 TGM5O43548 720 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 N4BP1O75113 896 aaKnown RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 GLP2RO95838 553 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 GLUD1P00367 558 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 ASS1P00966 412 aaKnown RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 FAM163BP0C2L3 166 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 SRGAP2BP0DMP2 458 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 EPCAMP16422 314 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 LTBRP36941 435 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 LHX1P48742 406 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 TNNC1P63316 161 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 DLX2Q07687 328 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 KCNH2Q12809 1159 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 ANO6Q4KMQ2 910 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 CBWD6Q4V339 395 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 ZNF667Q5HYK9 610 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 CBWD3Q5JTY5 395 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 CBWD5Q5RIA9 395 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 LILRA6Q6PI73 481 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 LIMS2Q7Z4I7 341 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 FAM114A1Q8IWE2 563 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 THEM5Q8N1Q8 247 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 CCDC150Q8NCX0 1101 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 FBXL13Q8NEE6 735 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 MMS19Q96T76 1030 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 PI4K2AQ9BTU6 479 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 IMPG2Q9BZV3 1241 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 NAT10Q9H0A0 1025 aaKnown RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 UBE2ZQ9H832 354 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 PRDM6Q9NQX0 595 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 SAMSN1Q9NSI8 373 aaKnown RBP12.82□□□□□ -0.36
VPS13D-204ENST00000469054 RAB20Q9NX57 234 aa12.82□□□□□ -0.36
VPS13D-204ENST00000469054 MAGEC2Q9UBF1 373 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms