RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 DHX9Q08211 1270 aaKnown RBP5.8□□□□□ -1.48
HMGB1-207ENST00000468384 POU4F2Q12837 409 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 SF3A1Q15459 793 aaKnown RBP5.8□□□□□ -1.48
HMGB1-207ENST00000468384 TMEM266Q2M3C6 531 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 CCDC30Q5VVM6 783 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 USP53Q70EK8 1073 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 G2E3Q7L622 706 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 PALB2Q86YC2 1186 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 NAGSQ8N159 534 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 UBXN4Q92575 508 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 ALKBH8Q96BT7 664 aaKnown RBP5.8□□□□□ -1.48
HMGB1-207ENST00000468384 MYO19Q96H55 970 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 RPS6KC1Q96S38 1066 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 RUBCNLQ9H714 662 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 CASS4Q9NQ75 786 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 VPS4AQ9UN37 437 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 BTBD3Q9Y2F9 522 aa5.8□□□□□ -1.48
HMGB1-207ENST00000468384 IGSF9BQ9UPX0 1349 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 GRM8O00222 908 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 TGM5O43548 720 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 ZC3H11AO75152 810 aaKnown RBP eCLIP5.79□□□□□ -1.48
HMGB1-207ENST00000468384 C1RP00736 705 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 IL2RAP01589 272 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 ZNF883P0CG24 379 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 ADD1P35611 737 aaKnown RBP5.79□□□□□ -1.48
HMGB1-207ENST00000468384 PTGIRP43119 386 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 RNF144AP50876 292 aaPredicted RBP5.79□□□□□ -1.48
HMGB1-207ENST00000468384 ERVPABLB-1P60509 514 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 PSMA6P60900 246 aaKnown RBP5.79□□□□□ -1.48
HMGB1-207ENST00000468384 DAB2P98082 770 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 RUNX1T1Q06455 604 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 GRIK2Q13002 908 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 DMC1Q14565 340 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 CLCA4Q14CN2 919 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 TBR1Q16650 682 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 PLEKHG6Q3KR16 790 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 HSDL1Q3SXM5 330 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 FAM78AQ5JUQ0 283 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 CLLU1OSQ5K130 101 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 UBXN11Q5T124 520 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 PI16Q6UXB8 463 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 SYT13Q7L8C5 426 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 NT5DC4Q86YG4 428 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 GLIS1Q8NBF1 620 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 TSTD1Q8NFU3 115 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 SGF29Q96ES7 293 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 NIF3L1Q9GZT8 377 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 KANSL2Q9H9L4 492 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 IL21RQ9HBE5 538 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 MRS2Q9HD23 443 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 TM7SF3Q9NS93 570 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 HMG20BQ9P0W2 317 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 GMIPQ9P107 970 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 LRP2BPQ9P2M1 347 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 POLIQ9UNA4 740 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 MRPS23Q9Y3D9 190 aaKnown RBP5.79□□□□□ -1.48
HMGB1-207ENST00000468384 MYH1P12882 1939 aa5.79□□□□□ -1.48
HMGB1-207ENST00000468384 EFSO43281 561 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 SORBS3O60504 671 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 LDLRP01130 860 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 CALML3P27482 149 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 P2RY2P41231 377 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 HDAC4P56524 1084 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 FANCCQ00597 558 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 NRG1Q02297 640 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-207ENST00000468384 LMOD3Q0VAK6 560 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 PSMD2Q13200 908 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 UVSSAQ2YD98 709 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 PABPC1LQ4VXU2 614 aaKnown RBP5.78□□□□□ -1.48
HMGB1-207ENST00000468384 SGO2Q562F6 1265 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 IER5Q5VY09 327 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 LILRA6Q6PI73 481 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 SLC30A10Q6XR72 485 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 FAM43BQ6ZT52 329 aaPredicted RBP5.78□□□□□ -1.48
HMGB1-207ENST00000468384 PHC2Q8IXK0 858 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 FRMD1Q8N878 549 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 GALNT11Q8NCW6 608 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 OLIG1Q8TAK6 271 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 TTC8Q8TAM2 541 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 DEPDC1BQ8WUY9 529 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 RLN3Q8WXF3 142 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 XAGE2Q96GT9 111 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 SUCLG2Q96I99 432 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 VCPIP1Q96JH7 1222 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 SPATA33Q96N06 139 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 ZDHHC5Q9C0B5 715 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 ADNPQ9H2P0 1102 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 VTI1BQ9UEU0 232 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 STK39Q9UEW8 545 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 PCDHGB2Q9Y5G2 931 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 PCDHGA1Q9Y5H4 931 aa5.78□□□□□ -1.48
HMGB1-207ENST00000468384 BAZ2BQ9UIF8 2168 aaKnown RBP5.77□□□□□ -1.49
HMGB1-207ENST00000468384 PNMA6FA0A0J9YX94 578 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 FAM221AA4D161 298 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 B4DLN1 442 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 EYA2O00167 538 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 EML1O00423 815 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 NFIBO00712 420 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 CCL16O15467 120 aa5.77□□□□□ -1.49
HMGB1-207ENST00000468384 LGALS2P05162 132 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms