RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TISP43B9A030 160 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 CYB561D2O14569 222 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 STX6O43752 255 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 MICAL2O94851 1124 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 IL18RAPO95256 599 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 GJA1P17302 382 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 CD72P21854 359 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 TFAMQ00059 246 aaKnown RBP18.95■□□□□ 0.62
COL7A1-206ENST00000466591 GPR17Q13304 367 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 TEAD2Q15562 447 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 SV2CQ496J9 727 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 ARHGAP15Q53QZ3 475 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 PRSS36Q5K4E3 855 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 SLC39A4Q6P5W5 647 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 PDILTQ8N807 584 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 ZSCAN18Q8TBC5 510 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-206ENST00000466591 IRF7Q92985 503 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 ZNF560Q96MR9 790 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 ZNF396Q96N95 335 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-206ENST00000466591 NELL2Q99435 816 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 FAM213AQ9BRX8 229 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 LRRC27Q9C0I9 530 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 ST6GALNAC4Q9H4F1 302 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 CEP72Q9P209 647 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 SLC27A5Q9Y2P5 690 aa18.95■□□□□ 0.62
COL7A1-206ENST00000466591 DPYSL4O14531 572 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 PPEF2O14830 753 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 ZNF263O14978 683 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 FAM189A1O60320 539 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 FGF19O95750 216 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 LDHAP00338 332 aaKnown RBP18.94■□□□□ 0.62
COL7A1-206ENST00000466591 GDI1P31150 447 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 AARSP49588 968 aaKnown RBP eCLIP18.94■□□□□ 0.62
COL7A1-206ENST00000466591 ALCAMQ13740 583 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 MGAT5BQ3V5L5 792 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 SLC39A12Q504Y0 691 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 L1TD1Q5T7N2 865 aaKnown RBP18.94■□□□□ 0.62
COL7A1-206ENST00000466591 CCDC65Q8IXS2 484 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 ADSSL1Q8N142 457 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 CSGALNACT1Q8TDX6 532 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 DNASE1L2Q92874 299 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 ASB16Q96NS5 453 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 USP28Q96RU2 1077 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 PLA2G2FQ9BZM2 168 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 HEBP1Q9NRV9 189 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 PANK4Q9NVE7 773 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 R4GN57 208 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 DOCK6Q96HP0 2047 aa18.94■□□□□ 0.62
COL7A1-206ENST00000466591 A0A1W2PRU2 124 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 MYMKA6NI61 221 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 LRRN2O75325 713 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 PSMC3P17980 439 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 CCR2P41597 374 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 MAGEA9P43362 315 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 TUFMP49411 452 aaKnown RBP18.93■□□□□ 0.62
COL7A1-206ENST00000466591 NT5DC4Q86YG4 428 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 HSCBQ8IWL3 235 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 ATAD1Q8NBU5 361 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 CACTINQ8WUQ7 758 aaKnown RBP18.93■□□□□ 0.62
COL7A1-206ENST00000466591 DEPDC1BQ8WUY9 529 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 E2F7Q96AV8 911 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 SAAL1Q96ER3 474 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 ATXN3LQ9H3M9 355 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 SEMA4AQ9H3S1 761 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 TMEM206Q9H813 350 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 LTB4R2Q9NPC1 389 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 NDRG2Q9UN36 371 aaKnown RBP18.93■□□□□ 0.62
COL7A1-206ENST00000466591 ASB3Q9Y575 518 aa18.93■□□□□ 0.62
COL7A1-206ENST00000466591 MTMR11A4FU01 709 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 MAN2B1O00754 1011 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 LMNAP02545 664 aaKnown RBP18.92■□□□□ 0.62
COL7A1-206ENST00000466591 ADRB2P07550 413 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 KRT19P08727 400 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 PNPLA4P41247 253 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 TSPY1Q01534 308 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 SLC39A14Q15043 492 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 CENPPQ6IPU0 288 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 FIZ1Q96SL8 496 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 OSBPL6Q9BZF3 934 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 RBAKQ9NYW8 714 aaPredicted RBP18.92■□□□□ 0.62
COL7A1-206ENST00000466591 MTMR6Q9Y217 621 aa18.92■□□□□ 0.62
COL7A1-206ENST00000466591 PIRO00625 290 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 VIPR2P41587 438 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 CDR1P51861 262 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 KPNA1P52294 538 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 AMPD3Q01432 767 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 POU5F1Q01860 360 aaKnown RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 FOXD4L5Q5VV16 416 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 DCP1BQ8IZD4 617 aaKnown RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 FOXD4L4Q8WXT5 416 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 ZSWIM3Q96MP5 696 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 BACH2Q9BYV9 841 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 ABI2Q9NYB9 513 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-206ENST00000466591 STYXL1Q9Y6J8 313 aa18.91■□□□□ 0.62
COL7A1-206ENST00000466591 ANO9A1A5B4 782 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 HEPACAM2A8MVW5 462 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 KPNA7A9QM74 516 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 SPTLC1O15269 473 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 SPTLC2O15270 562 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 KINO60870 393 aaKnown RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms